Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL356292.1-201ENST00000283110 373 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 SNORA27.1-201ENST00000362604 124 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNU6-862P-201ENST00000362804 105 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 Y_RNA.117-201ENST00000363294 101 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNU6-1048P-201ENST00000364054 107 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 Y_RNA.277-201ENST00000364754 102 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 SNORD116-13-201ENST00000384408 92 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNU6-136P-201ENST00000384663 107 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 Y_RNA.556-201ENST00000384677 113 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 MIR23A-201ENST00000385245 73 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNU11-3P-201ENST00000391111 133 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 HMGN2P39-201ENST00000398005 273 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 AL603910.2-201ENST00000407268 136 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 MIR1253-201ENST00000408273 105 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNA5SP270-201ENST00000411361 118 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
HOXA1P49639 AC008134.1-201ENST00000420943 193 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 AC099677.2-201ENST00000436385 175 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 MTND4LP30-201ENST00000454092 297 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 AL049873.1-201ENST00000480540 376 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 AC010598.1-201ENST00000510378 103 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNU6-191P-201ENST00000516295 94 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNA5SP148-201ENST00000516527 94 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 RNA5SP137-201ENST00000516833 135 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.82□□□□□ -2.12
HOXA1P49639 AC110588.1-201ENST00000559699 137 ntBASIC1.82□□□□□ -2.12
HOXA1P49639 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
HOXA1P49639 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
HOXA1P49639 SNORA25.1-201ENST00000362326 128 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 RNU1-58P-201ENST00000362413 163 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 snoU2-30.2-201ENST00000362805 70 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 Y_RNA.361-201ENST00000365515 120 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 Y_RNA.518-201ENST00000384552 113 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 SNORA53-201ENST00000391141 249 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 AL117342.1-201ENST00000404861 406 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 RNU6-1186P-201ENST00000410429 97 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 RNU2-61P-201ENST00000411069 191 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 RPL31P63-201ENST00000422565 375 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 AL021397.1-201ENST00000451806 248 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 RNA5SP20-201ENST00000515976 84 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 RNU6-1337P-201ENST00000516525 95 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 MIR4643-201ENST00000577473 78 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXA1P49639 MIR4438-201ENST00000585271 93 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 MIR6132-201ENST00000622083 109 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 MIR338-201ENST00000636369 67 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 U6.104-201ENST00000637979 90 ntBASIC1.81□□□□□ -2.12
HOXA1P49639 Y_RNA.350-201ENST00000365409 98 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 RNU6-326P-201ENST00000365480 107 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 MIR873-201ENST00000401120 77 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 RNU6-855P-201ENST00000410395 104 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 RN7SKP284-201ENST00000411002 343 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 RNU2-14P-201ENST00000411053 191 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.8□□□□□ -2.12
HOXA1P49639 ATP5J2P3-201ENST00000451550 258 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXA1P49639 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.8□□□□□ -2.12
HOXA1P49639 RNU1-131P-201ENST00000458943 161 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 RPL39P38-201ENST00000467018 153 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 RPS26P55-201ENST00000471178 356 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 MRPS17P9-201ENST00000511924 393 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 RNU6-1271P-201ENST00000517049 105 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 MIR3122-201ENST00000577243 73 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 MIR5007-201ENST00000583098 95 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXA1P49639 AC006006.1-201ENST00000603082 144 ntBASIC1.8□□□□□ -2.12
HOXA1P49639 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
HOXA1P49639 AC134026.1-201ENST00000623249 2239 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
HOXA1P49639 Y_RNA.136-201ENST00000363444 102 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 Y_RNA.188-201ENST00000363952 111 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 RNU6-740P-201ENST00000364734 105 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.79□□□□□ -2.12
HOXA1P49639 Y_RNA.401-201ENST00000383965 117 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 SNORA67.4-201ENST00000384688 142 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 Y_RNA.562-201ENST00000384695 113 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 AC245102.2-201ENST00000448956 180 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 RNVU1-2-201ENST00000516326 135 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 AL033523.1-201ENST00000605153 153 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.79□□□□□ -2.12
HOXA1P49639 AC046143.2-201ENST00000609789 160 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 U2.14-201ENST00000615943 113 ntBASIC1.79□□□□□ -2.12
HOXA1P49639 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
HOXA1P49639 MIR335-201ENST00000362173 94 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 RNU1-22P-201ENST00000363334 158 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 RNU6-514P-201ENST00000384208 107 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 Y_RNA.539-201ENST00000384635 107 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 SNORA26.5-201ENST00000391215 123 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.78□□□□□ -2.12
HOXA1P49639 AC055731.1-201ENST00000474387 401 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 TRBV12-1-201ENST00000479785 344 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 RN7SL636P-201ENST00000497504 294 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXA1P49639 SNORA31.25-201ENST00000517242 134 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 RNU7-128P-201ENST00000517247 62 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 SUMO2P18-201ENST00000518873 252 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXA1P49639 MIR5094-201ENST00000578766 85 ntBASIC1.78□□□□□ -2.12
HOXA1P49639 AL512605.2-201ENST00000592972 256 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 173.3 ms