Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 Y_RNA.124-201ENST00000363339 93 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 RNU4-76P-201ENST00000364509 141 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 RNU6-99P-201ENST00000364721 107 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.81□□□□□ -2.28
HLA-DQA1P01909 RPL23AP50-201ENST00000434149 455 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 UBE2V1P7-201ENST00000446395 340 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.81□□□□□ -2.28
HLA-DQA1P01909 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 MTND4P17-201ENST00000470444 350 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 OR9P1P-201ENST00000496431 281 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.81□□□□□ -2.28
HLA-DQA1P01909 RNU6-1291P-201ENST00000516591 104 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 RNA5SP404-201ENST00000517118 132 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.81□□□□□ -2.28
HLA-DQA1P01909 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.81□□□□□ -2.28
HLA-DQA1P01909 AL513534.2-201ENST00000603836 250 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 PISRT1.1-201ENST00000616930 107 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 AC139792.2-201ENST00000624218 587 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.81□□□□□ -2.28
HLA-DQA1P01909 MIR410-201ENST00000362222 80 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNU6-767P-201ENST00000384132 107 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNU6-424P-201ENST00000384367 105 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 SNORA25-201ENST00000384384 134 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNU6-376P-201ENST00000384731 106 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNU6-192P-201ENST00000391253 100 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNA5SP475-201ENST00000410568 110 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RAB28P5-201ENST00000427490 651 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 AL137792.2-201ENST00000443484 235 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNU6-625P-201ENST00000459412 107 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RPL17P19-201ENST00000489069 552 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.8□□□□□ -2.28
HLA-DQA1P01909 AC116353.2-201ENST00000505332 712 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 SNORA40.9-201ENST00000515895 93 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNU6-917P-201ENST00000516294 104 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 RNU6-341P-201ENST00000516973 96 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.8□□□□□ -2.28
HLA-DQA1P01909 HSPE1P19-201ENST00000603327 295 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 AL022345.2-201ENST00000606307 135 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 SNORA28-201ENST00000606769 126 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 MIR3674-201ENST00000636576 68 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 CASC19-280ENST00000642102 1351 ntBASIC0.8□□□□□ -2.28
HLA-DQA1P01909 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU6-845P-201ENST00000362578 103 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU6-1301P-201ENST00000362724 104 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU6-199P-201ENST00000362954 107 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU6-117P-201ENST00000365415 107 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 MIR653-201ENST00000385279 96 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 SNORD41-201ENST00000386967 70 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 SNORD12B-201ENST00000410433 91 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU6-1304P-201ENST00000411374 106 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AP1B1P2-201ENST00000416196 106 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 FGF7P6-202ENST00000451282 293 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AC048334.1-201ENST00000477975 159 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AC108729.3-201ENST00000513484 108 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU7-40P-201ENST00000516397 64 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU6-63P-201ENST00000516690 95 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU2-56P-201ENST00000516826 190 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 RNU6-1116P-201ENST00000517269 99 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 MTND4LP26-201ENST00000518144 282 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AC005899.2-201ENST00000584353 90 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AC080078.2-201ENST00000603766 501 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AC005828.6-201ENST00000606610 232 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 BX284668.6-201ENST00000606899 438 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 AC127459.3-201ENST00000624328 466 ntBASIC0.79□□□□□ -2.28
HLA-DQA1P01909 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.79□□□□□ -2.28
HLA-DQA1P01909 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
HLA-DQA1P01909 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
HLA-DQA1P01909 MIRLET7C-201ENST00000362160 84 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 Y_RNA.160-201ENST00000363677 92 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC114482.1-201ENST00000418010 247 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 PDCL2P1-201ENST00000419302 352 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.78□□□□□ -2.28
HLA-DQA1P01909 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.78□□□□□ -2.28
HLA-DQA1P01909 Z98949.2-201ENST00000440996 144 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC233266.1-201ENST00000454518 96 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 MIR2053-201ENST00000459295 91 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 RNU6-408P-201ENST00000515910 100 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 RNU7-12P-201ENST00000516030 62 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 RNU6-947P-201ENST00000516264 106 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC090049.2-201ENST00000550377 109 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC055872.1-201ENST00000570978 278 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 MIR3684-201ENST00000579779 74 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AL117336.2-201ENST00000602435 335 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC016727.1-205ENST00000605437 569 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 GHRLOS.1-201ENST00000610995 70 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC242852.1-201ENST00000612151 96 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC087588.2-201ENST00000617667 426 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC244015.1-201ENST00000622301 99 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC027335.2-201ENST00000624030 375 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AC091895.1-201ENST00000624494 256 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 AL669831.3-213ENST00000636676 183 ntBASIC0.78□□□□□ -2.28
HLA-DQA1P01909 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.77□□□□□ -2.29
HLA-DQA1P01909 RNU6-961P-201ENST00000363893 105 ntBASIC0.77□□□□□ -2.29
HLA-DQA1P01909 Y_RNA.243-201ENST00000364481 109 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms