Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC073544.1-201ENST00000600110 1595 ntBASIC1.26□□□□□ -2.21
SDC3O75056 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.26□□□□□ -2.21
SDC3O75056 MIR96-201ENST00000362288 78 ntBASIC1.26□□□□□ -2.21
SDC3O75056 RNU1-22P-201ENST00000363334 158 ntBASIC1.26□□□□□ -2.21
SDC3O75056 Y_RNA.796-201ENST00000364268 102 ntBASIC1.26□□□□□ -2.21
SDC3O75056 RNU6-99P-201ENST00000364721 107 ntBASIC1.26□□□□□ -2.21
SDC3O75056 Y_RNA.799-201ENST00000364992 102 ntBASIC1.26□□□□□ -2.21
SDC3O75056 SNORA20B-201ENST00000384220 132 ntBASIC1.26□□□□□ -2.21
SDC3O75056 RNU6-310P-201ENST00000384655 107 ntBASIC1.26□□□□□ -2.21
SDC3O75056 MIR150-201ENST00000385048 84 ntBASIC1.26□□□□□ -2.21
SDC3O75056 AL355796.1-201ENST00000406706 323 ntBASIC1.26□□□□□ -2.21
SDC3O75056 RN7SKP200-201ENST00000410564 320 ntBASIC1.26□□□□□ -2.21
SDC3O75056 MTCO3P19-201ENST00000415864 321 ntBASIC1.26□□□□□ -2.21
SDC3O75056 SNX2P2-201ENST00000424553 323 ntBASIC1.26□□□□□ -2.21
SDC3O75056 AC245047.3-201ENST00000429428 127 ntBASIC1.26□□□□□ -2.21
SDC3O75056 MIR2053-201ENST00000459295 91 ntBASIC1.26□□□□□ -2.21
SDC3O75056 AC010469.2-201ENST00000496412 480 ntBASIC1.26□□□□□ -2.21
SDC3O75056 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.26□□□□□ -2.21
SDC3O75056 SNORA4-201ENST00000584302 138 ntBASIC1.26□□□□□ -2.21
SDC3O75056 MIR3660-201ENST00000584845 100 ntBASIC1.26□□□□□ -2.21
SDC3O75056 AC021506.2-201ENST00000612354 169 ntBASIC1.26□□□□□ -2.21
SDC3O75056 MIR1244-1-201ENST00000612829 85 ntBASIC1.26□□□□□ -2.21
SDC3O75056 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.26□□□□□ -2.21
SDC3O75056 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.26□□□□□ -2.21
SDC3O75056 MIR1244-3-201ENST00000635744 85 ntBASIC1.26□□□□□ -2.21
SDC3O75056 MIR1244-2-201ENST00000636449 85 ntBASIC1.26□□□□□ -2.21
SDC3O75056 MIR1244-4-202ENST00000636813 85 ntBASIC1.26□□□□□ -2.21
SDC3O75056 AC018630.2-201ENST00000534866 2403 ntBASIC1.26□□□□□ -2.21
SDC3O75056 RNU6-1301P-201ENST00000362724 104 ntBASIC1.25□□□□□ -2.21
SDC3O75056 Y_RNA.390-201ENST00000383932 102 ntBASIC1.25□□□□□ -2.21
SDC3O75056 Y_RNA.498-201ENST00000384460 102 ntBASIC1.25□□□□□ -2.21
SDC3O75056 MIR625-201ENST00000385047 85 ntBASIC1.25□□□□□ -2.21
SDC3O75056 MIR513A1-201ENST00000385138 129 ntBASIC1.25□□□□□ -2.21
SDC3O75056 RNU11-5P-201ENST00000391216 129 ntBASIC1.25□□□□□ -2.21
SDC3O75056 AC114482.1-201ENST00000418010 247 ntBASIC1.25□□□□□ -2.21
SDC3O75056 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.25□□□□□ -2.21
SDC3O75056 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.25□□□□□ -2.21
SDC3O75056 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.25□□□□□ -2.21
SDC3O75056 COX6CP14-201ENST00000469580 174 ntBASIC1.25□□□□□ -2.21
SDC3O75056 RPS27P22-201ENST00000478056 241 ntBASIC1.25□□□□□ -2.21
SDC3O75056 AC097462.1-201ENST00000514125 324 ntBASIC1.25□□□□□ -2.21
SDC3O75056 SNORA40.9-201ENST00000515895 93 ntBASIC1.25□□□□□ -2.21
SDC3O75056 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.25□□□□□ -2.21
SDC3O75056 RNU6-264P-201ENST00000517134 104 ntBASIC1.25□□□□□ -2.21
SDC3O75056 AL078603.1-201ENST00000603824 313 ntBASIC1.25□□□□□ -2.21
SDC3O75056 AC005828.6-201ENST00000606610 232 ntBASIC1.25□□□□□ -2.21
SDC3O75056 AC040896.1-201ENST00000613819 479 ntBASIC1.25□□□□□ -2.21
SDC3O75056 AC087588.2-201ENST00000617667 426 ntBASIC1.25□□□□□ -2.21
SDC3O75056 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.25□□□□□ -2.21
SDC3O75056 RNA5SP259-201ENST00000365541 109 ntBASIC1.24□□□□□ -2.21
SDC3O75056 RNU6-440P-201ENST00000390882 105 ntBASIC1.24□□□□□ -2.21
SDC3O75056 RNU6-1156P-201ENST00000410365 100 ntBASIC1.24□□□□□ -2.21
SDC3O75056 MTND4P28-201ENST00000426217 387 ntBASIC1.24□□□□□ -2.21
SDC3O75056 RAB28P5-201ENST00000427490 651 ntBASIC1.24□□□□□ -2.21
SDC3O75056 SUMO1P2-201ENST00000452524 304 ntBASIC1.24□□□□□ -2.21
SDC3O75056 RNU6-625P-201ENST00000459412 107 ntBASIC1.24□□□□□ -2.21
SDC3O75056 snoU13.18-201ENST00000459483 104 ntBASIC1.24□□□□□ -2.21
SDC3O75056 AC093852.1-201ENST00000503587 266 ntBASIC1.24□□□□□ -2.21
SDC3O75056 AC022493.2-201ENST00000506122 481 ntBASIC1.24□□□□□ -2.21
SDC3O75056 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.24□□□□□ -2.21
SDC3O75056 AC023157.2-201ENST00000540596 141 ntBASIC1.24□□□□□ -2.21
SDC3O75056 AC019288.1-201ENST00000557918 224 ntBASIC1.24□□□□□ -2.21
SDC3O75056 AL162424.1-201ENST00000602325 221 ntBASIC1.24□□□□□ -2.21
SDC3O75056 AC136443.5-201ENST00000603741 370 ntBASIC1.24□□□□□ -2.21
SDC3O75056 AL365434.2-201ENST00000607979 234 ntBASIC1.24□□□□□ -2.21
SDC3O75056 MIR3674-201ENST00000636576 68 ntBASIC1.24□□□□□ -2.21
SDC3O75056 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
SDC3O75056 SNORD114-7-201ENST00000362520 77 ntBASIC1.23□□□□□ -2.21
SDC3O75056 SNORA27.1-201ENST00000362604 124 ntBASIC1.23□□□□□ -2.21
SDC3O75056 RNY1P14-201ENST00000384426 108 ntBASIC1.23□□□□□ -2.21
SDC3O75056 SNORA69.1-201ENST00000390904 137 ntBASIC1.23□□□□□ -2.21
SDC3O75056 Y_RNA.592-201ENST00000410274 109 ntBASIC1.23□□□□□ -2.21
SDC3O75056 SNORD12B-201ENST00000410433 91 ntBASIC1.23□□□□□ -2.21
SDC3O75056 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.23□□□□□ -2.21
SDC3O75056 AC010154.1-201ENST00000425857 269 ntBASIC1.23□□□□□ -2.21
SDC3O75056 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.23□□□□□ -2.21
SDC3O75056 PGBD4P5-201ENST00000445958 426 ntBASIC1.23□□□□□ -2.21
SDC3O75056 RPL30P7-201ENST00000479312 323 ntBASIC1.23□□□□□ -2.21
SDC3O75056 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.23□□□□□ -2.21
SDC3O75056 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.23□□□□□ -2.21
SDC3O75056 RNU7-4P-201ENST00000516961 62 ntBASIC1.23□□□□□ -2.21
SDC3O75056 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.23□□□□□ -2.21
SDC3O75056 AP002001.1-203ENST00000534002 267 ntBASIC1.23□□□□□ -2.21
SDC3O75056 CYP3A52P-201ENST00000563326 91 ntBASIC1.23□□□□□ -2.21
SDC3O75056 UBE2V2P2-201ENST00000587677 504 ntBASIC1.23□□□□□ -2.21
SDC3O75056 U6.115-201ENST00000636045 103 ntBASIC1.23□□□□□ -2.21
SDC3O75056 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
SDC3O75056 Y_RNA.142-201ENST00000363491 102 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNU6-454P-201ENST00000364292 107 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNU6-890P-201ENST00000384121 107 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNU6-1310P-201ENST00000384153 107 ntBASIC1.22□□□□□ -2.21
SDC3O75056 MIR562-201ENST00000384894 95 ntBASIC1.22□□□□□ -2.21
SDC3O75056 SNORA12.1-201ENST00000390873 148 ntBASIC1.22□□□□□ -2.21
SDC3O75056 AL034345.1-201ENST00000407768 123 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNA5SP475-201ENST00000410568 110 ntBASIC1.22□□□□□ -2.21
SDC3O75056 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.22□□□□□ -2.21
SDC3O75056 ELOCP24-201ENST00000456370 334 ntBASIC1.22□□□□□ -2.21
SDC3O75056 Y_RNA.653-201ENST00000459091 95 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNU6-470P-201ENST00000515954 104 ntBASIC1.22□□□□□ -2.21
SDC3O75056 RNA5SP20-201ENST00000515976 84 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms