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Protein–RNA interactions for Protein: O75056
SDC3, Syndecan-3, human
Predictions only
Length
442 aa
.
Download Table
Protein
RNA
Prediction (catRAPID)
Interaction (ENCODE eCLIP)
Gene
UniProt Accession
Transcript Symbol
Ensembl Transcript ID
Length
Transcript Status
Prediction Score
Prediction z-Score
p-Value
Fold Change
SDC3
O75056
AC073544.1-201
ENST00000600110
1595 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
CEP290-201
ENST00000309041
7616 nt
APPRIS ALT1
TSL 5
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR96-201
ENST00000362288
78 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
RNU1-22P-201
ENST00000363334
158 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
Y_RNA.796-201
ENST00000364268
102 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
RNU6-99P-201
ENST00000364721
107 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
Y_RNA.799-201
ENST00000364992
102 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
SNORA20B-201
ENST00000384220
132 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
RNU6-310P-201
ENST00000384655
107 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR150-201
ENST00000385048
84 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
AL355796.1-201
ENST00000406706
323 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
RN7SKP200-201
ENST00000410564
320 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MTCO3P19-201
ENST00000415864
321 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
SNX2P2-201
ENST00000424553
323 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
AC245047.3-201
ENST00000429428
127 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR2053-201
ENST00000459295
91 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
AC010469.2-201
ENST00000496412
480 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
AC025887.1-201
ENST00000578349
264 nt
TSL 3
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
SNORA4-201
ENST00000584302
138 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR3660-201
ENST00000584845
100 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
AC021506.2-201
ENST00000612354
169 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR1244-1-201
ENST00000612829
85 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
CDKN3-212
ENST00000620759
196 nt
TSL 5
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
LINC01359-207
ENST00000634799
487 nt
TSL 5
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR1244-3-201
ENST00000635744
85 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR1244-2-201
ENST00000636449
85 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
MIR1244-4-202
ENST00000636813
85 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
AC018630.2-201
ENST00000534866
2403 nt
BASIC
1.26
□□□□□ -2.21
SDC3
O75056
RNU6-1301P-201
ENST00000362724
104 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
Y_RNA.390-201
ENST00000383932
102 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
Y_RNA.498-201
ENST00000384460
102 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
MIR625-201
ENST00000385047
85 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
MIR513A1-201
ENST00000385138
129 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
RNU11-5P-201
ENST00000391216
129 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AC114482.1-201
ENST00000418010
247 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AL590705.2-201
ENST00000420204
281 nt
TSL 5
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AL590422.1-201
ENST00000451829
364 nt
TSL 3
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AL844175.1-201
ENST00000455153
323 nt
TSL 5
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
COX6CP14-201
ENST00000469580
174 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
RPS27P22-201
ENST00000478056
241 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AC097462.1-201
ENST00000514125
324 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
SNORA40.9-201
ENST00000515895
93 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
RNU4ATAC11P-201
ENST00000515939
126 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
RNU6-264P-201
ENST00000517134
104 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AL078603.1-201
ENST00000603824
313 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AC005828.6-201
ENST00000606610
232 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AC040896.1-201
ENST00000613819
479 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
AC087588.2-201
ENST00000617667
426 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
FAS-AS1.2-201
ENST00000620386
170 nt
BASIC
1.25
□□□□□ -2.21
SDC3
O75056
RNA5SP259-201
ENST00000365541
109 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
RNU6-440P-201
ENST00000390882
105 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
RNU6-1156P-201
ENST00000410365
100 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
MTND4P28-201
ENST00000426217
387 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
RAB28P5-201
ENST00000427490
651 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
SUMO1P2-201
ENST00000452524
304 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
RNU6-625P-201
ENST00000459412
107 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
snoU13.18-201
ENST00000459483
104 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
AC093852.1-201
ENST00000503587
266 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
AC022493.2-201
ENST00000506122
481 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
SEMA6A-AS1-204
ENST00000510682
521 nt
TSL 5
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
AC023157.2-201
ENST00000540596
141 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
AC019288.1-201
ENST00000557918
224 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
AL162424.1-201
ENST00000602325
221 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
AC136443.5-201
ENST00000603741
370 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
AL365434.2-201
ENST00000607979
234 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
MIR3674-201
ENST00000636576
68 nt
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
EYS-205
ENST00000393380
5450 nt
TSL 1 (best)
BASIC
1.24
□□□□□ -2.21
SDC3
O75056
SNORD114-7-201
ENST00000362520
77 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
SNORA27.1-201
ENST00000362604
124 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
RNY1P14-201
ENST00000384426
108 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
SNORA69.1-201
ENST00000390904
137 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
Y_RNA.592-201
ENST00000410274
109 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
SNORD12B-201
ENST00000410433
91 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
AL135923.1-201
ENST00000413066
196 nt
TSL 3
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
AC010154.1-201
ENST00000425857
269 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
LINC01073-201
ENST00000441659
149 nt
TSL 3
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
PGBD4P5-201
ENST00000445958
426 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
RPL30P7-201
ENST00000479312
323 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
LINC02491-201
ENST00000504710
403 nt
TSL 2
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
LINC01337-201
ENST00000515871
440 nt
TSL 3
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
RNU7-4P-201
ENST00000516961
62 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
AC090124.1-201
ENST00000525097
448 nt
TSL 3
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
AP002001.1-203
ENST00000534002
267 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
CYP3A52P-201
ENST00000563326
91 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
UBE2V2P2-201
ENST00000587677
504 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
U6.115-201
ENST00000636045
103 nt
BASIC
1.23
□□□□□ -2.21
SDC3
O75056
FABP12-201
ENST00000360464
551 nt
APPRIS P1
TSL 1 (best)
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
Y_RNA.142-201
ENST00000363491
102 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
RNU6-454P-201
ENST00000364292
107 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
RNU6-890P-201
ENST00000384121
107 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
RNU6-1310P-201
ENST00000384153
107 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
MIR562-201
ENST00000384894
95 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
SNORA12.1-201
ENST00000390873
148 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
AL034345.1-201
ENST00000407768
123 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
RNA5SP475-201
ENST00000410568
110 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
LINC01870-201
ENST00000427042
390 nt
TSL 3
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
ELOCP24-201
ENST00000456370
334 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
Y_RNA.653-201
ENST00000459091
95 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
RNU6-470P-201
ENST00000515954
104 nt
BASIC
1.22
□□□□□ -2.21
SDC3
O75056
RNA5SP20-201
ENST00000515976
84 nt
BASIC
1.22
□□□□□ -2.21
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Retrieved 100 of 98,524 protein–RNA pairs in 174 ms