Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR2276-201ENST00000516886 89 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 MIR3129-201ENST00000581095 76 ntBASIC3.56□□□□□ -1.84
USP3Q9Y6I4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
USP3Q9Y6I4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP3Q9Y6I4 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP3Q9Y6I4 AL136360.1-201ENST00000503377 1900 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 MIR30E-201ENST00000362104 92 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 Y_RNA.369-201ENST00000365568 117 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 MIR570-201ENST00000384917 97 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
USP3Q9Y6I4 Y_RNA.621-201ENST00000411065 96 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 AL161788.1-201ENST00000441805 169 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 COX6CP6-201ENST00000490840 228 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 MRPS17P9-201ENST00000511924 393 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 Y_RNA.677-201ENST00000516401 85 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 SNORA48.11-201ENST00000517015 89 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 RNU6-1231P-201ENST00000517185 103 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 MIR4425-201ENST00000580572 84 ntBASIC3.55□□□□□ -1.84
USP3Q9Y6I4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
USP3Q9Y6I4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.55□□□□□ -1.84
USP3Q9Y6I4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP3Q9Y6I4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
USP3Q9Y6I4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 SNRPGP10-201ENST00000432323 225 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 RNU7-170P-201ENST00000459303 61 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 snoU13.22-201ENST00000459428 104 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 NDUFA4P2-201ENST00000489989 244 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 CKS1BP2-201ENST00000497342 240 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 AL356280.1-201ENST00000603614 379 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 AC073413.2-201ENST00000604332 360 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.54□□□□□ -1.84
USP3Q9Y6I4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP3Q9Y6I4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
USP3Q9Y6I4 snoU2-30.2-201ENST00000362805 70 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 RNU6-508P-201ENST00000363231 103 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 SNORD46.1-201ENST00000364139 104 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 SNORA70.4-201ENST00000365509 134 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 Y_RNA.528-201ENST00000384575 108 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 FO393413.1-201ENST00000402892 195 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 AC007064.1-201ENST00000412238 351 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.53□□□□□ -1.84
USP3Q9Y6I4 AC005326.1-201ENST00000429197 123 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 HMGN2P34-201ENST00000437647 269 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 PHBP14-201ENST00000512887 367 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 RN7SKP282-201ENST00000516824 299 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 RNU6-537P-201ENST00000517277 103 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 PRELID2P1-201ENST00000552837 301 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.53□□□□□ -1.84
USP3Q9Y6I4 AC008507.4-201ENST00000585464 127 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 AC007179.3-201ENST00000604976 235 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 uc_338.28-201ENST00000612082 187 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 AC106754.2-201ENST00000623006 233 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP3Q9Y6I4 MAPK10-322ENST00000641485 4530 ntBASIC3.53□□□□□ -1.84
USP3Q9Y6I4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.53□□□□□ -1.84
USP3Q9Y6I4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP3Q9Y6I4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP3Q9Y6I4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
USP3Q9Y6I4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
USP3Q9Y6I4 Z83843.1-201ENST00000604070 3685 ntBASIC3.52□□□□□ -1.85
USP3Q9Y6I4 SNORA1-201ENST00000384107 130 ntBASIC3.52□□□□□ -1.85
USP3Q9Y6I4 MIR184-201ENST00000384962 84 ntBASIC3.52□□□□□ -1.85
USP3Q9Y6I4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
USP3Q9Y6I4 MIR1302-4-201ENST00000408701 150 ntBASIC3.52□□□□□ -1.85
USP3Q9Y6I4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.52□□□□□ -1.85
USP3Q9Y6I4 RNU6-341P-201ENST00000516973 96 ntBASIC3.52□□□□□ -1.85
USP3Q9Y6I4 MIR5582-201ENST00000579697 68 ntBASIC3.52□□□□□ -1.85
USP3Q9Y6I4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.52□□□□□ -1.85
USP3Q9Y6I4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP3Q9Y6I4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP3Q9Y6I4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 AC017071.1-201ENST00000564407 2204 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 MIR450A1-201ENST00000362262 91 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 Y_RNA.253-201ENST00000364562 112 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 RNA5SP125-201ENST00000364843 120 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 RNU6-106P-201ENST00000384405 107 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 MIR1263-201ENST00000408324 86 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 RNA5SP120-201ENST00000410900 112 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 AL353689.1-201ENST00000438895 199 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 SNRPGP13-201ENST00000442212 177 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 RPL23AP67-201ENST00000465341 474 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 RN7SL601P-201ENST00000471221 293 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 NDUFB9P3-201ENST00000521269 501 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms