Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCDHGA4Q9Y5G9 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCDHGA4Q9Y5G9 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 SNORA27-201ENST00000384323 126 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RNU1-13P-201ENST00000384499 162 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 Y_RNA.545-201ENST00000384652 105 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RNA5SP467-201ENST00000391274 118 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RNA5SP317-201ENST00000410176 116 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RNA5SP311-201ENST00000411290 116 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RN7SL330P-201ENST00000469709 307 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RNA5SP315-201ENST00000516340 116 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RNU2-58P-201ENST00000516403 183 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 SNORD45.4-201ENST00000516629 73 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 RNA5SP312-201ENST00000517068 116 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 SCARNA3-201ENST00000517097 143 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 MIR3186-201ENST00000577404 85 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 MIR4429-201ENST00000580105 73 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 AC103810.7-201ENST00000607821 91 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 ICE2P2-201ENST00000483823 2787 ntBASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHGA4Q9Y5G9 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 MFSD8-242ENST00000641690 4199 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 RNA5SP366-201ENST00000365454 123 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 Y_RNA.609-201ENST00000410669 89 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 RAB6C-AS1-202ENST00000433431 123 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 HLA-N-201ENST00000437516 135 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 RNU6-998P-201ENST00000515894 101 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 MIR6891-201ENST00000618788 93 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 MIR3653-201ENST00000625572 110 ntBASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHGA4Q9Y5G9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 Y_RNA.332-201ENST00000365271 113 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 NDUFB4P4-201ENST00000404822 243 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 AL109933.2-201ENST00000452651 260 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 RNU7-96P-201ENST00000459535 64 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 AC114801.3-201ENST00000510231 177 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 AC108729.3-201ENST00000513484 108 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 RNU1-142P-201ENST00000516682 145 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 MIR5047-201ENST00000579212 100 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 MIR492-201ENST00000638676 116 ntBASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHGA4Q9Y5G9 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 RNU6-546P-201ENST00000383991 107 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 SNORA80E-201ENST00000384744 137 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 Z92545.1-201ENST00000411782 234 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 RNU7-94P-201ENST00000459576 63 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 SNORA31.4-201ENST00000516049 129 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 AC006130.2-201ENST00000586202 326 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 MIR376B-201ENST00000614515 100 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 U7.4-201ENST00000614961 63 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 U6.108-201ENST00000637764 58 ntBASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCDHGA4Q9Y5G9 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 SPRR2C-201ENST00000290702 219 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 MIR383-201ENST00000362257 73 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 SNORD115-2-201ENST00000362842 82 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 Y_RNA.171-201ENST00000363760 102 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 RNU6-457P-201ENST00000363999 107 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 SNORD115-20-201ENST00000365099 82 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 RNU6-628P-201ENST00000410675 107 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 RNA5SP306-201ENST00000411087 107 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 SNORA74C-2-201ENST00000411179 201 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 PHBP14-201ENST00000512887 367 ntBASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.24□□□□□ -1.73
PCDHGA4Q9Y5G9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms