Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 7SK.11-201ENST00000615477 250 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 AC073349.3-201ENST00000617616 186 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 MIR8065-201ENST00000620577 100 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 7SK.13-201ENST00000622040 250 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
FOXA2Q9Y261 SNORA27.1-201ENST00000362604 124 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 Y_RNA.267-201ENST00000364679 109 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 SNORD81.2-201ENST00000365153 76 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 RNU6-318P-201ENST00000384283 103 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 SNORD12B-201ENST00000410433 91 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 RNU4-14P-201ENST00000410858 122 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 RNU6-1278P-201ENST00000516130 107 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.26□□□□□ -2.21
FOXA2Q9Y261 RAB11AP2-201ENST00000545905 639 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 SNORD53B-201ENST00000577887 78 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 BX248123.2-201ENST00000606318 124 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 AL359757.2-201ENST00000624309 274 ntBASIC1.26□□□□□ -2.21
FOXA2Q9Y261 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
FOXA2Q9Y261 RNU6-1301P-201ENST00000362724 104 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 RNU6-1310P-201ENST00000384153 107 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 MIR320A-201ENST00000385302 82 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
FOXA2Q9Y261 SNORA69.1-201ENST00000390904 137 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 FGF7P8-201ENST00000402994 292 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 RNU6-955P-201ENST00000410497 104 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 RN7SKP51-201ENST00000410781 304 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 SDAD1P3-201ENST00000427380 333 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 AC082651.2-201ENST00000496833 166 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA2Q9Y261 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA2Q9Y261 AC019288.1-201ENST00000557918 224 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 AC022306.2-201ENST00000617563 647 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 AC106754.2-201ENST00000623006 233 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 U6.115-201ENST00000636045 103 ntBASIC1.25□□□□□ -2.21
FOXA2Q9Y261 MIR410-201ENST00000362222 80 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 RNU4-76P-201ENST00000364509 141 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 SNORA25.8-201ENST00000364831 128 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 Y_RNA.577-201ENST00000384794 101 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 MIR660-201ENST00000385235 97 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 MIR764-201ENST00000390811 85 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.24□□□□□ -2.21
FOXA2Q9Y261 SNORD13-201ENST00000459299 104 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 AC091021.1-201ENST00000468051 388 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 AC023790.1-201ENST00000482174 347 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 AC022493.2-201ENST00000506122 481 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 AC015712.3-201ENST00000559380 164 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 AC080078.3-201ENST00000605407 463 ntBASIC1.24□□□□□ -2.21
FOXA2Q9Y261 RNU6-1188P-201ENST00000363795 107 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 RNU6-310P-201ENST00000384655 107 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 MIR517C-201ENST00000385103 95 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 SNORA67.5-201ENST00000391036 107 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 SNORA75.6-201ENST00000391318 127 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 MIR873-201ENST00000401120 77 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 RNU6-1156P-201ENST00000410365 100 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 Y_RNA.646-201ENST00000410980 101 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 MTND4P28-201ENST00000426217 387 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 AC098614.3-201ENST00000438957 440 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 SUMO1P2-201ENST00000452524 304 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 RPL39P38-201ENST00000467018 153 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 Y_RNA.675-201ENST00000516389 149 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 RNU6-341P-201ENST00000516973 96 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 MIR4778-201ENST00000577635 80 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 MIR3664-201ENST00000579074 99 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 MIR4524B-201ENST00000581569 115 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 AC122108.2-201ENST00000611946 526 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 AC133104.2-201ENST00000615272 193 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 AC127459.3-201ENST00000624328 466 ntBASIC1.23□□□□□ -2.21
FOXA2Q9Y261 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
FOXA2Q9Y261 SNORA67.6-201ENST00000391093 99 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 RNU6-1304P-201ENST00000411374 106 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AL137792.2-201ENST00000443484 235 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AC092991.1-201ENST00000477176 376 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.22□□□□□ -2.21
FOXA2Q9Y261 RNU6-408P-201ENST00000515910 100 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 RNU6-120P-201ENST00000516077 103 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 RNU7-28P-201ENST00000516759 62 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 RNU7-4P-201ENST00000516961 62 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AC144568.1-201ENST00000520139 137 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AP002004.2-201ENST00000531656 154 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AP002001.1-203ENST00000534002 267 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AL160236.1-201ENST00000556317 195 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
FOXA2Q9Y261 AL353997.5-201ENST00000618886 171 ntBASIC1.22□□□□□ -2.21
FOXA2Q9Y261 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA2Q9Y261 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.22□□□□□ -2.21
FOXA2Q9Y261 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
FOXA2Q9Y261 RNU1-17P-201ENST00000363022 152 ntBASIC1.21□□□□□ -2.22
FOXA2Q9Y261 RNU6-454P-201ENST00000364292 107 ntBASIC1.21□□□□□ -2.22
FOXA2Q9Y261 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.21□□□□□ -2.22
FOXA2Q9Y261 SNORA12.1-201ENST00000390873 148 ntBASIC1.21□□□□□ -2.22
FOXA2Q9Y261 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.21□□□□□ -2.22
FOXA2Q9Y261 MIR1304-201ENST00000408243 91 ntBASIC1.21□□□□□ -2.22
FOXA2Q9Y261 Y_RNA.592-201ENST00000410274 109 ntBASIC1.21□□□□□ -2.22
FOXA2Q9Y261 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA2Q9Y261 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.21□□□□□ -2.22
FOXA2Q9Y261 RPL30P15-201ENST00000457129 321 ntBASIC1.21□□□□□ -2.22
FOXA2Q9Y261 Y_RNA.653-201ENST00000459091 95 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms