Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
TRIM35Q9UPQ4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 RNU6-50P-201ENST00000362356 103 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 MIR554-201ENST00000384874 96 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 SNORD77B-201ENST00000391112 67 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 MIR1265-201ENST00000408444 86 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 RNU6ATAC-201ENST00000408749 126 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 Z92545.1-201ENST00000411782 234 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 SNX2P2-201ENST00000424553 323 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 GOT2P5-201ENST00000433995 546 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 AC108729.3-201ENST00000513484 108 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 AC090517.3-201ENST00000625170 141 ntBASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC4.84□□□□□ -1.63
TRIM35Q9UPQ4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
TRIM35Q9UPQ4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 SNORA5A-201ENST00000384111 134 ntBASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 HMGN2P8-201ENST00000391458 268 ntBASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 AP000567.1-201ENST00000406413 156 ntBASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 AL035423.1-201ENST00000420331 213 ntBASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 AL358944.1-201ENST00000528537 144 ntBASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 RNU6-86P-201ENST00000606534 107 ntBASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM35Q9UPQ4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 MIR342-201ENST00000362212 99 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 RNU6-268P-201ENST00000364174 107 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 MIR1253-201ENST00000408273 105 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 AC090844.1-201ENST00000422019 156 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 RPS15AP28-201ENST00000435088 386 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 snoU13.28-201ENST00000459235 104 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 AL360157.1-201ENST00000565962 87 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 MIR4444-1-201ENST00000581696 74 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 MIR3609-201ENST00000582661 80 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 MIR4444-2-201ENST00000584390 74 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 AL161912.2-201ENST00000565707 3007 ntBASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM35Q9UPQ4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 SNORD115-37-201ENST00000363768 82 ntBASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 SNORD14E-201ENST00000364009 85 ntBASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 SNRPGP14-201ENST00000435400 219 ntBASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 AC025750.2-201ENST00000442609 450 ntBASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 AC093259.1-201ENST00000509755 300 ntBASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 MIR1254-2-201ENST00000579553 63 ntBASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 AC021613.1-201ENST00000623880 111 ntBASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
TRIM35Q9UPQ4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 ATP5A1P2-201ENST00000412323 255 ntBASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 RPS12P2-201ENST00000439728 269 ntBASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 AP000553.6-201ENST00000641242 118 ntBASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM35Q9UPQ4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 RNU6-1094P-201ENST00000362416 104 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 SNORD9-201ENST00000362566 104 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 RNU6-1186P-201ENST00000410429 97 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 POLR2J4-204ENST00000418424 324 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 SNORA70.18-201ENST00000516696 98 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 RNU6-341P-201ENST00000516973 96 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 AC026403.1-201ENST00000518938 295 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 MIR3922-201ENST00000585192 84 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 Y_RNA.788-201ENST00000622394 112 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 AC034229.5-201ENST00000624258 185 ntBASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM35Q9UPQ4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
TRIM35Q9UPQ4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.78□□□□□ -1.64
TRIM35Q9UPQ4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.78□□□□□ -1.64
TRIM35Q9UPQ4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
TRIM35Q9UPQ4 Y_RNA.267-201ENST00000364679 109 ntBASIC4.78□□□□□ -1.64
TRIM35Q9UPQ4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 203.5 ms