Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
DDX56Q9NY93 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
DDX56Q9NY93 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.01
DDX56Q9NY93 Y_RNA.446-201ENST00000384178 104 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 SNORD115-46-201ENST00000390982 71 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 U3.40-201ENST00000408706 208 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.46□□□□□ -2.02
DDX56Q9NY93 AC108938.1-201ENST00000451204 136 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.46□□□□□ -2.02
DDX56Q9NY93 RNA5SP24-201ENST00000516478 95 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 RNA5SP148-201ENST00000516527 94 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 RNU7-110P-201ENST00000516891 62 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 AC023157.2-201ENST00000540596 141 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.46□□□□□ -2.02
DDX56Q9NY93 AC103810.6-201ENST00000606708 136 ntBASIC2.46□□□□□ -2.02
DDX56Q9NY93 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
DDX56Q9NY93 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
DDX56Q9NY93 Y_RNA.133-201ENST00000363428 110 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 RNU6-324P-201ENST00000363957 106 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 AC245047.4-201ENST00000433189 144 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 HMGN1P10-201ENST00000474557 553 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 RPL36AP21-201ENST00000490372 323 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 RNU6-1278P-201ENST00000516130 107 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 MIR514B-201ENST00000516774 80 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 RNU7-172P-201ENST00000517125 64 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 PRR13P7-201ENST00000605538 430 ntBASIC2.45□□□□□ -2.02
DDX56Q9NY93 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.45□□□□□ -2.02
DDX56Q9NY93 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
DDX56Q9NY93 SNORD113-8-201ENST00000363497 74 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 SNORD115-30-201ENST00000364117 82 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 RNU6-950P-201ENST00000384651 107 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 RNU6-21P-201ENST00000384710 107 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
DDX56Q9NY93 snosnR66.1-201ENST00000391095 99 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 Y_RNA.602-201ENST00000410535 92 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 RNU6-1199P-201ENST00000411249 104 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 RPL21P38-201ENST00000418090 167 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 FTH1P12-201ENST00000432137 551 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 AL731563.1-201ENST00000442202 214 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.44□□□□□ -2.02
DDX56Q9NY93 AL163195.1-201ENST00000496941 348 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 AC021269.2-201ENST00000532318 330 ntBASIC2.44□□□□□ -2.02
DDX56Q9NY93 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.44□□□□□ -2.02
DDX56Q9NY93 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.44□□□□□ -2.02
DDX56Q9NY93 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
DDX56Q9NY93 Y_RNA.47-201ENST00000362697 108 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 SNORA5B-201ENST00000363786 132 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 Y_RNA.176-201ENST00000363815 109 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 SNORA63D-201ENST00000364359 132 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 Y_RNA.286-201ENST00000364813 102 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 Y_RNA.331-201ENST00000365267 102 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 Y_RNA.574-201ENST00000384766 95 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 MIR215-201ENST00000384858 110 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 MIR562-201ENST00000384894 95 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.43□□□□□ -2.02
DDX56Q9NY93 AC024067.1-201ENST00000426199 223 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 RPL23AP7-203ENST00000449021 469 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 RPS26P45-201ENST00000471748 340 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 AC010409.1-201ENST00000487382 476 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 AC234781.5-201ENST00000508429 271 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 AC097462.1-201ENST00000514125 324 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 AP003733.2-201ENST00000529409 171 ntBASIC2.43□□□□□ -2.02
DDX56Q9NY93 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.43□□□□□ -2.02
DDX56Q9NY93 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.43□□□□□ -2.02
DDX56Q9NY93 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.43□□□□□ -2.02
DDX56Q9NY93 RNU6-296P-201ENST00000384608 107 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 MIR634-201ENST00000385208 97 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 AL031003.1-201ENST00000404229 172 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 RPS26P55-201ENST00000471178 356 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.42□□□□□ -2.02
DDX56Q9NY93 HMGB3P17-201ENST00000504195 649 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 SEPT14P8-201ENST00000508026 178 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 AC025465.3-201ENST00000510570 311 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 RNU6-1143P-201ENST00000516125 104 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 SNORA31.17-201ENST00000516953 127 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.42□□□□□ -2.02
DDX56Q9NY93 AC022254.1-201ENST00000567857 235 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 MIR5007-201ENST00000583098 95 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 AL162730.1-201ENST00000605734 292 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 AC127459.3-201ENST00000624328 466 ntBASIC2.42□□□□□ -2.02
DDX56Q9NY93 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
DDX56Q9NY93 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.41□□□□□ -2.02
DDX56Q9NY93 MIRLET7G-201ENST00000362280 84 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 snoU2_19.2-201ENST00000363024 80 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 RNU1-22P-201ENST00000363334 158 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 SNORA33-201ENST00000363664 130 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 RNU6-102P-201ENST00000384485 104 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 MIR568-201ENST00000385036 95 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 RNU6-710P-201ENST00000410424 105 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 HMGN2P19-201ENST00000425149 265 ntBASIC2.41□□□□□ -2.02
DDX56Q9NY93 SNORA44.1-201ENST00000517031 108 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 167.8 ms