Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 FAM106DP-201ENST00000586416 501 ntBASIC0.96□□□□□ -2.26
KLHL28Q9NXS3 AC018638.8-201ENST00000588755 281 ntBASIC0.96□□□□□ -2.26
KLHL28Q9NXS3 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.96□□□□□ -2.26
KLHL28Q9NXS3 ZNF299P-201ENST00000406845 1804 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 Y_RNA.6-201ENST00000362350 114 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 RNU6-505P-201ENST00000384427 107 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 AL034345.1-201ENST00000407768 123 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 MIR1277-201ENST00000408536 78 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 MTND3P23-201ENST00000431980 347 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 SNORD5.1-201ENST00000458800 75 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 RNU7-175P-201ENST00000515915 61 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 RNU7-99P-201ENST00000516271 62 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 SNORA70.22-201ENST00000517160 124 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 RNU1-54P-201ENST00000517181 120 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 AL590705.4-201ENST00000532209 134 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 AL513534.2-201ENST00000603836 250 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 SNORD114-21-201ENST00000606412 72 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 AC084782.3-201ENST00000612282 578 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 AC093913.1-201ENST00000614178 329 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 AC002553.4-201ENST00000616896 331 ntBASIC0.95□□□□□ -2.26
KLHL28Q9NXS3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 RNU6-137P-201ENST00000363680 108 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 RNU6-1013P-201ENST00000384180 107 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 RNU6-793P-201ENST00000384233 104 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 MTND1P4-201ENST00000435196 415 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 AC026782.1-201ENST00000512952 449 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 AC091144.1-201ENST00000519573 138 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 AL162424.1-201ENST00000602325 221 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 RMST_2.1-201ENST00000617263 136 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 AC073349.3-201ENST00000617616 186 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 MIR6767-201ENST00000637302 66 ntBASIC0.94□□□□□ -2.26
KLHL28Q9NXS3 Y_RNA.179-201ENST00000363844 90 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 MIR548F5-201ENST00000408421 86 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 RNU7-94P-201ENST00000459576 63 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 Y_RNA.670-201ENST00000516255 105 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AC134698.4-201ENST00000523451 826 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AF235103.2-201ENST00000525753 346 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 MIR4661-201ENST00000582720 75 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AC068790.6-201ENST00000602558 258 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AC018462.2-201ENST00000605375 395 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AC005014.2-201ENST00000607795 599 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 AL021879.1-201ENST00000611756 288 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 SNORD3E-202ENST00000627253 216 ntBASIC0.93□□□□□ -2.26
KLHL28Q9NXS3 RNU6-874P-201ENST00000362390 105 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 RNU6-1266P-201ENST00000362794 105 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 Y_RNA.106-201ENST00000363189 100 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 RNU6-280P-201ENST00000364145 104 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 RNU6-281P-201ENST00000384212 103 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MIR19B1-201ENST00000384829 87 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MIR660-201ENST00000385235 97 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MIR548K-201ENST00000408406 116 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 Y_RNA.594-201ENST00000410373 140 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MTND1P34-201ENST00000438556 671 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MTND4P18-201ENST00000447010 465 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 AC093303.1-201ENST00000514549 295 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 SNORA31.2-201ENST00000516019 134 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 SNORA31.4-201ENST00000516049 129 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 RNU6-113P-201ENST00000516653 101 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 RNU6-922P-201ENST00000516753 99 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 AC027419.1-201ENST00000522976 328 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MIR5701-3-201ENST00000578890 82 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MIR5701-1-201ENST00000585138 82 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 AC010999.1-201ENST00000611856 324 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MIR5701-2-201ENST00000615634 82 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 AC106754.2-201ENST00000623006 233 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 AC139792.2-201ENST00000624218 587 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 MTND5P16-201ENST00000460269 1703 ntBASIC0.92□□□□□ -2.26
KLHL28Q9NXS3 RNU4-38P-201ENST00000364472 129 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 Y_RNA.339-201ENST00000365325 102 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 RNU6-1001P-201ENST00000411265 100 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 RNU6-1054P-201ENST00000411293 104 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AL139396.1-201ENST00000421137 167 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 RPS3AP52-201ENST00000435639 297 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 U8.22-201ENST00000459141 133 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 RPL7P42-201ENST00000481005 679 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 SCARNA16.2-201ENST00000516520 172 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AC093023.1-201ENST00000547375 507 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AC125232.2-201ENST00000592457 143 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 7SK.7-201ENST00000603504 247 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 GHRLOS.1-201ENST00000610995 70 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 AL357075.2-201ENST00000614906 189 ntBASIC0.91□□□□□ -2.26
KLHL28Q9NXS3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 170.5 ms