Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.133-201ENST00000363428 110 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RNU6-392P-201ENST00000364926 101 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.551-201ENST00000384661 102 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RNU6-1105P-201ENST00000384774 107 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 MIR561-201ENST00000385216 97 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 SNORD78.2-201ENST00000391076 69 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RPL21P1-201ENST00000399532 476 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AL033519.2-201ENST00000403958 392 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RNU6-121P-201ENST00000410525 99 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AC016925.1-201ENST00000458303 298 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 MTND5P22-201ENST00000458380 195 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RNU6-397P-201ENST00000516226 104 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RNU6-1045P-201ENST00000516321 107 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RNU1-117P-201ENST00000517041 158 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.721-201ENST00000517207 102 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AC091144.1-201ENST00000519573 138 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AC131281.1-201ENST00000522984 164 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 SNORD53B-201ENST00000577887 78 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AL390123.1-201ENST00000603216 237 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 RPL17P51-201ENST00000605218 238 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AL121655.1-201ENST00000605811 308 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 BX248123.2-201ENST00000606318 124 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 SNORD11B-201ENST00000607707 90 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 AC068205.3-201ENST00000636385 468 ntBASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
UPF3AQ9H1J1 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 RNU1-42P-201ENST00000364033 160 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.210-201ENST00000364161 110 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 RNU4-50P-201ENST00000364361 141 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 SNORA25.9-201ENST00000365087 128 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 RNU6-611P-201ENST00000384276 104 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.512-201ENST00000384518 102 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 MIR568-201ENST00000385036 95 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 MIR548B-201ENST00000385247 97 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 snosnR66.1-201ENST00000391095 99 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 MRPL35P1-201ENST00000404272 572 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 MIR1262-201ENST00000408276 93 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 AC004965.1-201ENST00000413033 213 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 PCNPP5-201ENST00000452246 481 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 AC093259.1-201ENST00000509755 300 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 SNORA4.4-201ENST00000515921 135 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 RNU6-897P-201ENST00000517135 105 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 NDUFA5P6-201ENST00000542110 379 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 AC018448.1-201ENST00000552843 316 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 AL117187.1-201ENST00000555482 181 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 AL355297.3-201ENST00000604082 446 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 U4atac.1-201ENST00000618345 95 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 AC008555.8-201ENST00000623602 2168 ntBASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
UPF3AQ9H1J1 RNA5SP276-201ENST00000362580 94 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 SNORD31B-201ENST00000364977 69 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.332-201ENST00000365271 113 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.380-201ENST00000365663 111 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.459-201ENST00000384251 102 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 MIR586-201ENST00000385035 97 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 MIR1283-1-201ENST00000408494 87 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 BX510359.4-201ENST00000423750 193 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 AC073910.1-201ENST00000445047 438 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 PRELID3BP1-201ENST00000457142 540 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 MRPS35P2-201ENST00000508242 191 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 RNU6-408P-201ENST00000515910 100 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 RNA5SP490-201ENST00000517141 136 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 RPS29P30-201ENST00000600975 111 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 ZNF702P-202ENST00000434269 1966 ntBASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
UPF3AQ9H1J1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AL391987.6-201ENST00000305671 199 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 RNU6-454P-201ENST00000364292 107 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 SNORD48-201ENST00000364953 64 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 Y_RNA.508-201ENST00000384502 114 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 MIR320B2-201ENST00000408479 138 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AL353689.1-201ENST00000438895 199 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 MTCO1P44-201ENST00000441935 243 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AC009238.1-201ENST00000442165 424 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AC009237.6-201ENST00000446969 424 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 UQCRBP2-201ENST00000447827 297 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AC016717.1-201ENST00000448918 286 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AC009474.2-201ENST00000451383 136 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AC010531.2-201ENST00000465012 153 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 MIR4423-201ENST00000580922 80 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 AL109918.3-201ENST00000603072 338 ntBASIC1.78□□□□□ -2.12
UPF3AQ9H1J1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.78□□□□□ -2.13
UPF3AQ9H1J1 MIR410-201ENST00000362222 80 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RNU6-1309P-201ENST00000363305 108 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RNU6-626P-201ENST00000363354 107 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.143-201ENST00000363520 106 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.222-201ENST00000364264 102 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms