Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 MIR181A2-201ENST00000384863 110 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.83□□□□□ -1.8
TRERF1Q96PN7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.83□□□□□ -1.8
TRERF1Q96PN7 RNU7-57P-201ENST00000459540 60 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 AC010598.1-201ENST00000510378 103 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.83□□□□□ -1.8
TRERF1Q96PN7 MIR3129-201ENST00000581095 76 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 AC002064.3-201ENST00000623448 346 ntBASIC3.83□□□□□ -1.8
TRERF1Q96PN7 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TRERF1Q96PN7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RNU6-655P-201ENST00000362858 107 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RNA5SP374-201ENST00000362939 125 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.796-201ENST00000364268 102 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.799-201ENST00000364992 102 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RNU6-117P-201ENST00000365415 107 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.366-201ENST00000365540 102 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 SNORD78.1-201ENST00000390866 65 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 NDUFB4P4-201ENST00000404822 243 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RNA5SP136-201ENST00000410906 107 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 AC245102.2-201ENST00000448956 180 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 AL031183.1-201ENST00000457667 207 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RPL27AP5-201ENST00000469428 449 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RNU7-149P-201ENST00000516739 59 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RNU6-91P-201ENST00000607774 107 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 Pinc.1-201ENST00000616452 154 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.82□□□□□ -1.8
TRERF1Q96PN7 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRERF1Q96PN7 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.82□□□□□ -1.8
TRERF1Q96PN7 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TRERF1Q96PN7 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TRERF1Q96PN7 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.81□□□□□ -1.8
TRERF1Q96PN7 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TRERF1Q96PN7 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
TRERF1Q96PN7 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.81□□□□□ -1.8
TRERF1Q96PN7 MIR494-201ENST00000349529 81 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 MIR148B-201ENST00000362252 99 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 RNU6-1209P-201ENST00000363655 107 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 RNU4-13P-201ENST00000364019 141 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.220-201ENST00000364244 109 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 RNU6-1152P-201ENST00000384576 107 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 RPS3AP1-201ENST00000413190 320 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 SNRPGP3-201ENST00000469405 227 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 COX6CP6-201ENST00000490840 228 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 MIR5004-201ENST00000579078 107 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 U6.98-201ENST00000637157 84 ntBASIC3.81□□□□□ -1.8
TRERF1Q96PN7 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.81□□□□□ -1.8
TRERF1Q96PN7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TRERF1Q96PN7 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.81□□□□□ -1.8
TRERF1Q96PN7 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 AC010889.1-201ENST00000566193 2666 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 RNU6-1113P-201ENST00000384348 107 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 MIR562-201ENST00000384894 95 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 MIR450A2-201ENST00000385022 100 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 AP000567.1-201ENST00000406413 156 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 AC109327.2-201ENST00000448339 378 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 AC092185.1-201ENST00000491371 97 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 snoMBII-202.2-201ENST00000517263 86 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 AL137067.1-201ENST00000615933 120 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 AC091152.2-201ENST00000591628 2569 ntBASIC3.8□□□□□ -1.8
TRERF1Q96PN7 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.49-201ENST00000362714 112 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 Y_RNA.111-201ENST00000363248 100 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 RNY1P10-201ENST00000363268 113 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 RNA5SP293-201ENST00000410527 113 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 RNU4-47P-201ENST00000410876 114 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 AC016717.1-201ENST00000448918 286 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 MIR449C-201ENST00000516047 92 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 RNU5F-4P-201ENST00000516581 114 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 MALAT1.1-201ENST00000618249 95 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 AC134878.1-201ENST00000619901 243 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 AL589743.1-201ENST00000551932 2712 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRERF1Q96PN7 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRERF1Q96PN7 AC026241.1-201ENST00000517873 2142 ntBASIC3.79□□□□□ -1.8
TRERF1Q96PN7 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TRERF1Q96PN7 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
TRERF1Q96PN7 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
TRERF1Q96PN7 SNORD32B-201ENST00000364460 84 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 RNU6-820P-201ENST00000384273 107 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 MIR147B-201ENST00000390185 80 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 RNA5SP354-201ENST00000391247 136 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 SNORA26-201ENST00000391286 122 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 MIR1283-1-201ENST00000408494 87 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 AC245291.1-201ENST00000419501 328 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 MTATP8P2-201ENST00000435212 202 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 AC009969.1-201ENST00000438726 172 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 RPS4XP11-201ENST00000446897 772 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 AC112771.1-201ENST00000463581 102 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 SNORD19.2-201ENST00000516978 73 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 AC068657.1-201ENST00000520807 306 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 XIST_intron.1-201ENST00000619444 68 ntBASIC3.78□□□□□ -1.8
TRERF1Q96PN7 AC025521.1-201ENST00000621624 286 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms