Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 RNA5SP327-201ENST00000362494 101 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.72-201ENST00000362894 103 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 RNU1-22P-201ENST00000363334 158 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 SNORA20B-201ENST00000384220 132 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.482-201ENST00000384377 111 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 MIR562-201ENST00000384894 95 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 MIR618-201ENST00000385287 98 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 AL355796.1-201ENST00000406706 323 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 UQCRBP2-201ENST00000447827 297 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.23□□□□□ -2.21
ZNF560Q96MR9 AC107399.1-201ENST00000451226 265 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 AC097462.1-201ENST00000514125 324 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.23□□□□□ -2.21
ZNF560Q96MR9 AC027419.1-201ENST00000522976 328 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.23□□□□□ -2.21
ZNF560Q96MR9 AC104260.1-201ENST00000616660 539 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.23□□□□□ -2.21
ZNF560Q96MR9 MIR6079-201ENST00000635807 62 ntBASIC1.23□□□□□ -2.21
ZNF560Q96MR9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
ZNF560Q96MR9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.164-201ENST00000363709 102 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.473-201ENST00000384333 102 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.557-201ENST00000384680 107 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 MIR660-201ENST00000385235 97 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 FCF1P9-201ENST00000412546 282 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.22□□□□□ -2.21
ZNF560Q96MR9 PCNPP5-201ENST00000452246 481 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 AC093852.1-201ENST00000503587 266 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 RNU6-358P-201ENST00000516564 75 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 RNU7-172P-201ENST00000517125 64 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.22□□□□□ -2.21
ZNF560Q96MR9 RPL21P9-201ENST00000556149 474 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 AC005899.2-201ENST00000584353 90 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 AL513534.2-201ENST00000603836 250 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 SNORD3E-202ENST00000627253 216 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 AC099654.5-201ENST00000636479 350 ntBASIC1.22□□□□□ -2.21
ZNF560Q96MR9 AC073544.1-201ENST00000600110 1595 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 RNU6-601P-201ENST00000384540 107 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AL591704.2-201ENST00000421658 181 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.21□□□□□ -2.22
ZNF560Q96MR9 RNU7-87P-201ENST00000459343 62 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AC116353.2-201ENST00000505332 712 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 RN7SKP179-201ENST00000516126 217 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 Y_RNA.676-201ENST00000516393 96 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AC011712.1-201ENST00000588959 234 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 AC060780.3-201ENST00000589464 80 ntBASIC1.21□□□□□ -2.22
ZNF560Q96MR9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.21□□□□□ -2.22
ZNF560Q96MR9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
ZNF560Q96MR9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
ZNF560Q96MR9 RNU6-874P-201ENST00000362390 105 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 RPL37P10-201ENST00000412884 288 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 HMGN1P7-201ENST00000491722 313 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 AC069439.1-201ENST00000494739 167 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.2□□□□□ -2.22
ZNF560Q96MR9 RN7SKP49-201ENST00000516675 260 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 RNU7-28P-201ENST00000516759 62 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.2□□□□□ -2.22
ZNF560Q96MR9 AC018448.1-201ENST00000552843 316 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 AL050343.2-201ENST00000607338 280 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 AC009229.3-201ENST00000608056 282 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 AL357075.2-201ENST00000614906 189 ntBASIC1.2□□□□□ -2.22
ZNF560Q96MR9 SNORA27.1-201ENST00000362604 124 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 RNU6-879P-201ENST00000364328 108 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 Y_RNA.498-201ENST00000384460 102 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 STAG3L5P-204ENST00000443759 179 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 AC092991.1-201ENST00000477176 376 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 AC087343.1-201ENST00000477341 475 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 AC018710.1-201ENST00000506509 158 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 RNA5SP20-201ENST00000515976 84 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 RNU6-307P-201ENST00000516743 106 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 RNU6-341P-201ENST00000516973 96 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 RNU6-165P-201ENST00000517170 99 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.19□□□□□ -2.22
ZNF560Q96MR9 MIR4295-201ENST00000585286 85 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 AC080078.3-201ENST00000605407 463 ntBASIC1.19□□□□□ -2.22
ZNF560Q96MR9 RNA5SP361-201ENST00000362686 118 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 RNU4-76P-201ENST00000364509 141 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 RNU6-505P-201ENST00000384427 107 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 MIR653-201ENST00000385279 96 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.18□□□□□ -2.22
ZNF560Q96MR9 AL353997.1-201ENST00000432936 108 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 MTND3P10-201ENST00000450967 341 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 FGF7P6-202ENST00000451282 293 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 SUMO1P2-201ENST00000452524 304 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.18□□□□□ -2.22
ZNF560Q96MR9 COX6CP14-201ENST00000469580 174 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.18□□□□□ -2.22
ZNF560Q96MR9 AC091178.2-201ENST00000584401 117 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 PISRT1.1-201ENST00000616930 107 ntBASIC1.18□□□□□ -2.22
ZNF560Q96MR9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.17□□□□□ -2.22
ZNF560Q96MR9 Y_RNA.88-201ENST00000363029 99 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 Y_RNA.265-201ENST00000364677 108 ntBASIC1.17□□□□□ -2.22
ZNF560Q96MR9 MIR1285-1-201ENST00000408593 84 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms