Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AL117342.1-201ENST00000404861 406 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 RN7SKP156-201ENST00000410308 342 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 RN7SKP284-201ENST00000411002 343 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 SNORA57.3-201ENST00000411095 141 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 CST2P1-201ENST00000425770 87 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 RPS29P31-201ENST00000446147 164 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 PDCD5P2-201ENST00000507570 312 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 RNU6-1291P-201ENST00000516591 104 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 AC007536.1-201ENST00000533382 349 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 MIR6500-201ENST00000622700 86 ntBASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.52□□□□□ -1.85
DEPDC4Q8N2C3 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 RNA5SP125-201ENST00000364843 120 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 ARF4P2-201ENST00000430209 526 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 PRSS3P4-201ENST00000453323 162 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 RN7SL807P-201ENST00000470923 297 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 RNU6-589P-201ENST00000516485 107 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 AP002004.2-201ENST00000531656 154 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 SNORA51-201ENST00000606420 132 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 MIR6868-201ENST00000611215 58 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 MIR6129-201ENST00000616087 109 ntBASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
DEPDC4Q8N2C3 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 RNU6-755P-201ENST00000364400 103 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 SNORD58C-201ENST00000365223 64 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 SNORA11.2-201ENST00000408318 127 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 AF228730.3-201ENST00000436691 102 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 AC009238.1-201ENST00000442165 424 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 AC009237.6-201ENST00000446969 424 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 MIR4738-201ENST00000579134 87 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 MIR4425-201ENST00000580572 84 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 AC093010.3-201ENST00000570269 15214 ntBASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
DEPDC4Q8N2C3 RNU6-309P-201ENST00000364573 106 ntBASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 MIR199A2-201ENST00000385289 110 ntBASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 FTH1P12-201ENST00000432137 551 ntBASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 RNU6-1061P-201ENST00000516530 99 ntBASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 AL670379.3-201ENST00000605040 251 ntBASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 AC039056.2-201ENST00000622261 511 ntBASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
DEPDC4Q8N2C3 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 SNORA63.1-201ENST00000362493 131 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 SNORD114-6-201ENST00000364393 72 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 Y_RNA.267-201ENST00000364679 109 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 RNU6-283P-201ENST00000364788 107 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 SNORD61-201ENST00000384252 73 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 SNORA12.1-201ENST00000390873 148 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 RNA5SP323-201ENST00000391094 133 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 AC006989.1-201ENST00000427212 131 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 AL133547.1-201ENST00000448546 220 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 SCARNA13-201ENST00000516672 275 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 MTND5P34-201ENST00000568888 325 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 MIR5685-201ENST00000579080 79 ntBASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
DEPDC4Q8N2C3 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 MIR126-201ENST00000362291 85 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 MIRLET7F2-201ENST00000385277 83 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 SNORD72-201ENST00000390994 80 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 RPS29P7-201ENST00000439662 171 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 RN7SKP282-201ENST00000516824 299 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 RNA5SP179-201ENST00000517284 121 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 AC091544.4-201ENST00000555268 342 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 MIR3129-201ENST00000581095 76 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 AL022345.2-201ENST00000606307 135 ntBASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.47□□□□□ -1.85
DEPDC4Q8N2C3 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
DEPDC4Q8N2C3 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
DEPDC4Q8N2C3 Y_RNA.346-201ENST00000365385 112 ntBASIC3.46□□□□□ -1.86
DEPDC4Q8N2C3 SNORA1-201ENST00000384107 130 ntBASIC3.46□□□□□ -1.86
DEPDC4Q8N2C3 SNORA8-201ENST00000384574 139 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms