Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 RNU6-718P-201ENST00000516166 105 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 RNU6-922P-201ENST00000516753 99 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 MIR4295-201ENST00000585286 85 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 AL513534.2-201ENST00000603836 250 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 AL022345.2-201ENST00000606307 135 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 SNORD114-21-201ENST00000606412 72 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 SNORA28-201ENST00000606769 126 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 AL357075.2-201ENST00000614906 189 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 RNU4-40P-201ENST00000364351 143 ntBASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.364-201ENST00000365532 101 ntBASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.594-201ENST00000410373 140 ntBASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 RNU6-1016P-201ENST00000516689 94 ntBASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 CYCSP23-201ENST00000519781 313 ntBASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 BX284668.6-201ENST00000606899 438 ntBASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 AC027335.2-201ENST00000624030 375 ntBASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.2-201ENST00000362330 96 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RNU6-874P-201ENST00000362390 105 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.86-201ENST00000363020 111 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RNU6-1145P-201ENST00000384246 107 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RNU6-700P-201ENST00000391043 107 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 MIR548K-201ENST00000408406 116 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RNU6-1050P-201ENST00000410388 107 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RAB28P5-201ENST00000427490 651 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 CALM2P4-201ENST00000430810 426 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RNU7-87P-201ENST00000459343 62 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AC087343.1-201ENST00000477341 475 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RNA5SP168-201ENST00000516642 112 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AC105029.1-201ENST00000520250 669 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RPL21P9-201ENST00000556149 474 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 HSPE1P19-201ENST00000603327 295 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AC103810.9-201ENST00000606688 112 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 AC073544.1-201ENST00000600110 1595 ntBASIC1.13□□□□□ -2.23
CCDC40Q4G0X9 RNA5SP361-201ENST00000362686 118 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.265-201ENST00000364677 108 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 RNU6-53P-201ENST00000365367 106 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.557-201ENST00000384680 107 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 RNU6-510P-201ENST00000391239 108 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 MTCYBP4-201ENST00000401524 249 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 MIR548F5-201ENST00000408421 86 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 AC074085.1-201ENST00000413598 418 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 AC018865.2-201ENST00000423631 129 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 AL353997.1-201ENST00000432936 108 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 HSPE1P13-201ENST00000451143 297 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 AC091021.1-201ENST00000468051 388 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 RNA5SP20-201ENST00000515976 84 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.670-201ENST00000516255 105 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 MIR3684-201ENST00000579779 74 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 AC104260.1-201ENST00000616660 539 ntBASIC1.12□□□□□ -2.23
CCDC40Q4G0X9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 SNORA27.1-201ENST00000362604 124 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RNU6-199P-201ENST00000362954 107 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RNY1P16-201ENST00000363063 111 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RNU6-593P-201ENST00000364716 112 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RNU6-407P-201ENST00000365280 104 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RNU6-424P-201ENST00000384367 105 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 MIR653-201ENST00000385279 96 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RNU11-5P-201ENST00000391216 129 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 U8.16-201ENST00000391279 133 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 MIR1277-201ENST00000408536 78 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 MTCYBP10-201ENST00000424905 650 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RPS3AP52-201ENST00000435639 297 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 U8.22-201ENST00000459141 133 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 AC011352.1-201ENST00000512300 793 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 SNORD116-28-201ENST00000516123 91 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 AC080078.3-201ENST00000605407 463 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.11□□□□□ -2.23
CCDC40Q4G0X9 RNU1-124P-201ENST00000363861 145 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 RNU6-879P-201ENST00000364328 108 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.267-201ENST00000364679 109 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 SNORD41-201ENST00000386967 70 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 RPS23P4-201ENST00000487908 423 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 OR9P1P-201ENST00000496431 281 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 AC074133.1-201ENST00000515696 183 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 RNU2-56P-201ENST00000516826 190 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 AC018448.1-201ENST00000552843 316 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 AC091178.2-201ENST00000584401 117 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 AC002553.4-201ENST00000616896 331 ntBASIC1.1□□□□□ -2.23
CCDC40Q4G0X9 SNORA1B-201ENST00000362535 133 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 MIR222-201ENST00000384992 110 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 MTND3P8-201ENST00000412909 339 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 PCNPP5-201ENST00000452246 481 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AC105758.1-201ENST00000506038 399 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 SNORA31.2-201ENST00000516019 134 ntBASIC1.09□□□□□ -2.23
CCDC40Q4G0X9 Y_RNA.708-201ENST00000516950 96 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms