Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MIR3616-201ENST00000584070 92 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 AC068647.2-201ENST00000637380 353 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXA4Q00056 AC092435.3-201ENST00000565538 3654 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 AC009487.4-201ENST00000624969 3585 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXA4Q00056 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXA4Q00056 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXA4Q00056 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
HOXA4Q00056 Y_RNA.7-201ENST00000362352 102 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 Y_RNA.24-201ENST00000362508 103 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 snoU2_19.4-201ENST00000364329 80 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 Y_RNA.238-201ENST00000364441 102 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 RNU6-746P-201ENST00000384112 109 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 RNU6-804P-201ENST00000384286 107 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 MIR626-201ENST00000385032 94 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 SNORA40.19-201ENST00000390846 128 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 AC060773.1-201ENST00000421698 310 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXA4Q00056 AC104332.2-201ENST00000429959 156 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 Z96811.1-201ENST00000445880 108 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 HSPE1P13-201ENST00000451143 297 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 AC010409.1-201ENST00000487382 476 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.28□□□□□ -2.04
HOXA4Q00056 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXA4Q00056 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXA4Q00056 RNA5SP356-201ENST00000515972 94 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 RNU2-34P-201ENST00000516534 121 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.28□□□□□ -2.04
HOXA4Q00056 AC004832.4-201ENST00000608952 331 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 AC104465.1-201ENST00000611365 139 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 AC096644.4-201ENST00000563417 2912 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXA4Q00056 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXA4Q00056 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXA4Q00056 AL159152.1-201ENST00000635019 2587 ntBASIC2.28□□□□□ -2.04
HOXA4Q00056 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HOXA4Q00056 RNU6-1205P-201ENST00000363625 106 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 SNORA5B-201ENST00000363786 132 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 RNU6-271P-201ENST00000363858 105 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 RNU6-818P-201ENST00000364837 108 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 RNU6-851P-201ENST00000384565 107 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 RNU6-136P-201ENST00000384663 107 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 AL355497.1-201ENST00000406262 551 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 AL031121.1-201ENST00000406553 254 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 RNA5SP511-201ENST00000410487 115 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 RNU5E-9P-201ENST00000411164 104 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 AC008134.1-201ENST00000420943 193 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 CR769767.1-201ENST00000436337 346 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.27□□□□□ -2.05
HOXA4Q00056 AL357134.1-201ENST00000445848 426 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 SNORD109B-201ENST00000458961 67 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 SNORD109A-201ENST00000459128 67 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 RPS27P22-201ENST00000478056 241 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 SNORA4.4-201ENST00000515921 135 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 AC107016.2-201ENST00000547968 190 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.27□□□□□ -2.05
HOXA4Q00056 AC004832.5-201ENST00000608677 401 ntBASIC2.27□□□□□ -2.05
HOXA4Q00056 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXA4Q00056 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
HOXA4Q00056 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXA4Q00056 RNU6-1180P-201ENST00000364935 107 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 RNU4-17P-201ENST00000365598 141 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 MIR518C-201ENST00000384822 101 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 RNU6-381P-201ENST00000391259 108 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 RNU6-1135P-201ENST00000411083 103 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXA4Q00056 SCARNA8-201ENST00000515924 131 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 RNU7-115P-201ENST00000516433 55 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXA4Q00056 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 MIR4635-201ENST00000583759 79 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 U2.20-201ENST00000613956 192 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 Y_RNA.802-201ENST00000614892 130 ntBASIC2.26□□□□□ -2.05
HOXA4Q00056 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
HOXA4Q00056 Y_RNA.8-201ENST00000362353 102 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 Y_RNA.182-201ENST00000363880 111 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 SNORD114-6-201ENST00000364393 72 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 RNU6-117P-201ENST00000365415 107 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
HOXA4Q00056 RNU6-969P-201ENST00000383900 105 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 SNORA8.3-201ENST00000384679 139 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 RNA5SP210-201ENST00000391034 120 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 RNU6-394P-201ENST00000410735 107 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 RNU6-383P-201ENST00000410864 94 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXA4Q00056 AC092427.1-202ENST00000430569 476 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXA4Q00056 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXA4Q00056 AL392103.1-201ENST00000447000 198 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 RNU6-1278P-201ENST00000516130 107 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 RNU6-453P-201ENST00000516819 85 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 Y_RNA.703-201ENST00000516846 111 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 RNU6-856P-201ENST00000516959 98 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 POLR3GP1-201ENST00000594073 261 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 AC005972.2-201ENST00000604690 348 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 MIR548AY-201ENST00000617669 107 ntBASIC2.25□□□□□ -2.05
HOXA4Q00056 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXA4Q00056 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms