Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CTCFP49711 AC006026.1-201ENST00000444025 1803 ntBASIC2.07□□□□□ -2.08
CTCFP49711 SNORD42.2-201ENST00000365570 69 ntBASIC2.06□□□□□ -2.08
CTCFP49711 Y_RNA.395-201ENST00000383945 109 ntBASIC2.06□□□□□ -2.08
CTCFP49711 AL117342.1-201ENST00000404861 406 ntBASIC2.06□□□□□ -2.08
CTCFP49711 AC096644.2-201ENST00000429278 159 ntBASIC2.06□□□□□ -2.08
CTCFP49711 AC099677.2-201ENST00000436385 175 ntBASIC2.06□□□□□ -2.08
CTCFP49711 UQCRBP2-201ENST00000447827 297 ntBASIC2.06□□□□□ -2.08
CTCFP49711 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.06□□□□□ -2.08
CTCFP49711 AC112492.4-201ENST00000456549 352 ntBASIC2.06□□□□□ -2.08
CTCFP49711 AC011406.1-201ENST00000512440 370 ntBASIC2.06□□□□□ -2.08
CTCFP49711 RNU6-1223P-201ENST00000517124 104 ntBASIC2.06□□□□□ -2.08
CTCFP49711 SUMO2P18-201ENST00000518873 252 ntBASIC2.06□□□□□ -2.08
CTCFP49711 CYCSP23-201ENST00000519781 313 ntBASIC2.06□□□□□ -2.08
CTCFP49711 SNORD53B-201ENST00000577887 78 ntBASIC2.06□□□□□ -2.08
CTCFP49711 MIR4713-201ENST00000582691 75 ntBASIC2.06□□□□□ -2.08
CTCFP49711 U2.1-201ENST00000618978 145 ntBASIC2.06□□□□□ -2.08
CTCFP49711 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.06□□□□□ -2.08
CTCFP49711 Y_RNA.605-201ENST00000410577 105 ntBASIC2.05□□□□□ -2.08
CTCFP49711 AC009310.1-201ENST00000414414 451 ntBASIC2.05□□□□□ -2.08
CTCFP49711 AL137792.2-201ENST00000443484 235 ntBASIC2.05□□□□□ -2.08
CTCFP49711 Y_RNA.639-201ENST00000458981 102 ntBASIC2.05□□□□□ -2.08
CTCFP49711 RNA5SP57-201ENST00000459463 123 ntBASIC2.05□□□□□ -2.08
CTCFP49711 RNU6-1170P-201ENST00000515974 106 ntBASIC2.05□□□□□ -2.08
CTCFP49711 RNU6-1041P-201ENST00000516254 102 ntBASIC2.05□□□□□ -2.08
CTCFP49711 RNU6-911P-201ENST00000516523 104 ntBASIC2.05□□□□□ -2.08
CTCFP49711 AC025647.1-201ENST00000517879 253 ntBASIC2.05□□□□□ -2.08
CTCFP49711 AL442163.3-201ENST00000554110 156 ntBASIC2.05□□□□□ -2.08
CTCFP49711 AL353149.1-201ENST00000610667 244 ntBASIC2.05□□□□□ -2.08
CTCFP49711 AC006001.4-201ENST00000622243 395 ntBASIC2.05□□□□□ -2.08
CTCFP49711 AL160413.1-201ENST00000622780 310 ntBASIC2.05□□□□□ -2.08
CTCFP49711 MIR4272-201ENST00000635924 64 ntBASIC2.05□□□□□ -2.08
CTCFP49711 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.05□□□□□ -2.08
CTCFP49711 RNU1-115P-201ENST00000365329 160 ntBASIC2.04□□□□□ -2.08
CTCFP49711 Y_RNA.394-201ENST00000383942 103 ntBASIC2.04□□□□□ -2.08
CTCFP49711 RNY3P4-201ENST00000384428 101 ntBASIC2.04□□□□□ -2.08
CTCFP49711 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.04□□□□□ -2.08
CTCFP49711 PCNPP5-201ENST00000452246 481 ntBASIC2.04□□□□□ -2.08
CTCFP49711 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.04□□□□□ -2.08
CTCFP49711 MTND4P29-201ENST00000503122 1372 ntBASIC2.04□□□□□ -2.08
CTCFP49711 AC074133.1-201ENST00000515696 183 ntBASIC2.04□□□□□ -2.08
CTCFP49711 SNORA40.9-201ENST00000515895 93 ntBASIC2.04□□□□□ -2.08
CTCFP49711 Y_RNA.661-201ENST00000516003 99 ntBASIC2.04□□□□□ -2.08
CTCFP49711 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.04□□□□□ -2.08
CTCFP49711 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC2.04□□□□□ -2.08
CTCFP49711 uc_338.22-201ENST00000622722 187 ntBASIC2.04□□□□□ -2.08
CTCFP49711 MIR369-201ENST00000362155 70 ntBASIC2.03□□□□□ -2.08
CTCFP49711 RNU6-862P-201ENST00000362804 105 ntBASIC2.03□□□□□ -2.08
CTCFP49711 Y_RNA.393-201ENST00000383936 102 ntBASIC2.03□□□□□ -2.08
CTCFP49711 Y_RNA.460-201ENST00000384255 102 ntBASIC2.03□□□□□ -2.08
CTCFP49711 SNORD12B-201ENST00000410433 91 ntBASIC2.03□□□□□ -2.08
CTCFP49711 TOMM22P2-201ENST00000430735 237 ntBASIC2.03□□□□□ -2.08
CTCFP49711 HMGN2P34-201ENST00000437647 269 ntBASIC2.03□□□□□ -2.08
CTCFP49711 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.03□□□□□ -2.08
CTCFP49711 HMGN1P13-201ENST00000505795 138 ntBASIC2.03□□□□□ -2.08
CTCFP49711 RNU4-77P-201ENST00000516692 156 ntBASIC2.03□□□□□ -2.08
CTCFP49711 AC018448.1-201ENST00000552843 316 ntBASIC2.03□□□□□ -2.08
CTCFP49711 AC092447.9-201ENST00000603395 144 ntBASIC2.03□□□□□ -2.08
CTCFP49711 AL645939.4-201ENST00000604495 135 ntBASIC2.03□□□□□ -2.08
CTCFP49711 AC010900.2-201ENST00000604508 210 ntBASIC2.03□□□□□ -2.08
CTCFP49711 AC090574.1-201ENST00000623186 233 ntBASIC2.03□□□□□ -2.08
CTCFP49711 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.03□□□□□ -2.08
CTCFP49711 MIR338-201ENST00000636369 67 ntBASIC2.03□□□□□ -2.08
CTCFP49711 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.03□□□□□ -2.09
CTCFP49711 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.02□□□□□ -2.09
CTCFP49711 AC245060.5-201ENST00000610778 3293 ntBASIC2.02□□□□□ -2.09
CTCFP49711 RNU1-42P-201ENST00000364033 160 ntBASIC2.02□□□□□ -2.09
CTCFP49711 RNU6-1264P-201ENST00000383891 107 ntBASIC2.02□□□□□ -2.09
CTCFP49711 RNU6-708P-201ENST00000384217 107 ntBASIC2.02□□□□□ -2.09
CTCFP49711 AC008134.1-201ENST00000420943 193 ntBASIC2.02□□□□□ -2.09
CTCFP49711 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.02□□□□□ -2.09
CTCFP49711 RNU6-107P-201ENST00000516643 102 ntBASIC2.02□□□□□ -2.09
CTCFP49711 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.02□□□□□ -2.09
CTCFP49711 AP002001.1-203ENST00000534002 267 ntBASIC2.02□□□□□ -2.09
CTCFP49711 SUB1P4-201ENST00000566062 339 ntBASIC2.02□□□□□ -2.09
CTCFP49711 AC006600.1-201ENST00000572529 153 ntBASIC2.02□□□□□ -2.09
CTCFP49711 VN1R91P-201ENST00000594377 169 ntBASIC2.02□□□□□ -2.09
CTCFP49711 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.02□□□□□ -2.09
CTCFP49711 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC2.02□□□□□ -2.09
CTCFP49711 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CTCFP49711 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CTCFP49711 MIR410-201ENST00000362222 80 ntBASIC2.01□□□□□ -2.09
CTCFP49711 snoU2-30.2-201ENST00000362805 70 ntBASIC2.01□□□□□ -2.09
CTCFP49711 MIR628-201ENST00000385229 95 ntBASIC2.01□□□□□ -2.09
CTCFP49711 RNA5SP61-201ENST00000516453 100 ntBASIC2.01□□□□□ -2.09
CTCFP49711 MIR5094-201ENST00000578766 85 ntBASIC2.01□□□□□ -2.09
CTCFP49711 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.01□□□□□ -2.09
CTCFP49711 SNORD58B-201ENST00000607313 66 ntBASIC2.01□□□□□ -2.09
CTCFP49711 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.01□□□□□ -2.09
CTCFP49711 AC090971.5-201ENST00000621102 293 ntBASIC2.01□□□□□ -2.09
CTCFP49711 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CTCFP49711 Y_RNA.287-201ENST00000364853 94 ntBASIC2□□□□□ -2.09
CTCFP49711 RNA5SP100-201ENST00000410903 110 ntBASIC2□□□□□ -2.09
CTCFP49711 RNA5SP59-201ENST00000410922 110 ntBASIC2□□□□□ -2.09
CTCFP49711 RPS20P15-201ENST00000412792 311 ntBASIC2□□□□□ -2.09
CTCFP49711 RNU6-625P-201ENST00000459412 107 ntBASIC2□□□□□ -2.09
CTCFP49711 RPL26P26-201ENST00000480251 434 ntBASIC2□□□□□ -2.09
CTCFP49711 RNU6-1012P-201ENST00000516606 109 ntBASIC2□□□□□ -2.09
CTCFP49711 5S_rRNA.3-201ENST00000517021 110 ntBASIC2□□□□□ -2.09
CTCFP49711 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms