Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL354695.1-201ENST00000427935 228 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 AC112492.4-201ENST00000456549 352 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 RNU6-1041P-201ENST00000516254 102 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 RNU2-34P-201ENST00000516534 121 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 RNU6-1012P-201ENST00000516606 109 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 RNU6-856P-201ENST00000516959 98 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.99□□□□□ -2.09
HOXC9P31274 AC040896.1-201ENST00000613819 479 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC9P31274 RNU6-961P-201ENST00000363893 105 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 SNORD14.1-201ENST00000365609 90 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 RNU6-1264P-201ENST00000383891 107 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 RNU6-1227P-201ENST00000383981 107 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 MRPL42P3-201ENST00000401492 326 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 RNA5SP450-201ENST00000411206 102 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 AC060773.1-201ENST00000421698 310 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 MTCYBP6-201ENST00000441810 138 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXC9P31274 RNU1-131P-201ENST00000458943 161 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 AC074133.1-201ENST00000515696 183 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 SUMO2P18-201ENST00000518873 252 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 AC040926.1-201ENST00000530195 238 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 MIR4287-201ENST00000579398 78 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 AL390123.1-201ENST00000603216 237 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.98□□□□□ -2.09
HOXC9P31274 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
HOXC9P31274 RNA5SP276-201ENST00000362580 94 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 RNA5SP465-201ENST00000391195 109 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 MIR1185-2-201ENST00000408687 86 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
HOXC9P31274 SDAD1P3-201ENST00000427380 333 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 ATP5J2P3-201ENST00000451550 258 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 NDUFB4P10-201ENST00000452541 359 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 RNU6-475P-201ENST00000516073 104 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 AC027419.1-201ENST00000522976 328 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 AP003072.1-201ENST00000531740 145 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 AP002001.1-203ENST00000534002 267 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.97□□□□□ -2.09
HOXC9P31274 AC240442.1-201ENST00000616055 283 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
HOXC9P31274 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.97□□□□□ -2.09
HOXC9P31274 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HOXC9P31274 Y_RNA.202-201ENST00000364083 110 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 SNORA25.9-201ENST00000365087 128 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 Y_RNA.389-201ENST00000383924 113 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 Y_RNA.471-201ENST00000384312 102 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 RNU6-1011P-201ENST00000384668 107 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 Y_RNA.645-201ENST00000391229 102 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.96□□□□□ -2.1
HOXC9P31274 MIR1253-201ENST00000408273 105 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 RNA5SP475-201ENST00000410568 110 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 AL356379.1-201ENST00000414105 126 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 AC016909.1-201ENST00000415916 166 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 TOMM22P2-201ENST00000430735 237 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 HMGN2P34-201ENST00000437647 269 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.96□□□□□ -2.1
HOXC9P31274 RNU6-221P-201ENST00000459541 99 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 AC011406.1-201ENST00000512440 370 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.96□□□□□ -2.1
HOXC9P31274 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.96□□□□□ -2.1
HOXC9P31274 AC124312.5-201ENST00000604451 268 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.96□□□□□ -2.1
HOXC9P31274 SDR42E1P4-201ENST00000620894 481 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 MIR3674-201ENST00000636576 68 ntBASIC1.96□□□□□ -2.1
HOXC9P31274 AC008555.8-201ENST00000623602 2168 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 RNU6-1266P-201ENST00000362794 105 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 RNU4-50P-201ENST00000364361 141 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 SNORA72.2-201ENST00000365028 127 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 Y_RNA.526-201ENST00000384572 110 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 Y_RNA.527-201ENST00000384573 102 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXC9P31274 RNA5SP233-201ENST00000459153 113 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 RPL26P26-201ENST00000480251 434 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 RNU1-92P-201ENST00000517017 135 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 AC025647.1-201ENST00000517879 253 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXC9P31274 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.95□□□□□ -2.1
HOXC9P31274 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.95□□□□□ -2.1
HOXC9P31274 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HOXC9P31274 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HOXC9P31274 RNU6-862P-201ENST00000362804 105 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 RNU6-1240P-201ENST00000365155 104 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 RNU6-20P-201ENST00000384106 107 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AL512604.1-201ENST00000404812 257 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 MIR1304-201ENST00000408243 91 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 MIR1276-201ENST00000408707 83 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 RNU6-101P-201ENST00000410323 104 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 RNA5SP501-201ENST00000410990 112 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AC008134.1-201ENST00000420943 193 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AC096920.1-201ENST00000423991 241 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXC9P31274 RNU6-397P-201ENST00000516226 104 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 RNVU1-2-201ENST00000516326 135 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXC9P31274 AC055872.1-201ENST00000570978 278 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AC104695.3-201ENST00000604052 296 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AC091932.3-201ENST00000624223 323 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 AC022513.1-201ENST00000624512 117 ntBASIC1.94□□□□□ -2.1
HOXC9P31274 ZNF702P-202ENST00000434269 1966 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms