Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC093023.1-201ENST00000547375 507 ntBASIC0.8□□□□□ -2.28
SEMA3DO95025 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.8□□□□□ -2.28
SEMA3DO95025 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.8□□□□□ -2.28
SEMA3DO95025 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.8□□□□□ -2.28
SEMA3DO95025 AL162424.1-201ENST00000602325 221 ntBASIC0.8□□□□□ -2.28
SEMA3DO95025 AC080078.2-201ENST00000603766 501 ntBASIC0.8□□□□□ -2.28
SEMA3DO95025 AL020996.3-201ENST00000606617 222 ntBASIC0.8□□□□□ -2.28
SEMA3DO95025 MIR6128-201ENST00000615528 109 ntBASIC0.8□□□□□ -2.28
SEMA3DO95025 RNY4P14-201ENST00000363656 96 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 RNU5F-3P-201ENST00000363767 117 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 Y_RNA.265-201ENST00000364677 108 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 Y_RNA.473-201ENST00000384333 102 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 MIR181A1-201ENST00000385026 110 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 SNORD41-201ENST00000386967 70 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 U8.16-201ENST00000391279 133 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 RNU6-1001P-201ENST00000411265 100 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 USP9YP16-201ENST00000430287 407 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 MTND3P21-201ENST00000433774 331 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 USP9YP23-201ENST00000455085 407 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.79□□□□□ -2.28
SEMA3DO95025 AC105758.1-201ENST00000506038 399 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 AC018710.1-201ENST00000506509 158 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 AC097462.1-201ENST00000514125 324 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 RNU6-917P-201ENST00000516294 104 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 RN7SKP49-201ENST00000516675 260 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 RNU6-566P-201ENST00000516790 107 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 RNU7-172P-201ENST00000517125 64 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 AC136443.5-201ENST00000603741 370 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 GHRLOS.1-201ENST00000610995 70 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 AC015540.1-201ENST00000615828 501 ntBASIC0.79□□□□□ -2.28
SEMA3DO95025 MTND5P16-201ENST00000460269 1703 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.78□□□□□ -2.28
SEMA3DO95025 HSBP1P2-201ENST00000299671 229 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 RNU6-199P-201ENST00000362954 107 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 Y_RNA.89-201ENST00000363031 102 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 Y_RNA.224-201ENST00000364308 111 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 Y_RNA.267-201ENST00000364679 109 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 Y_RNA.436-201ENST00000384097 102 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 MIR518E-201ENST00000385252 88 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 RNU1-139P-201ENST00000391307 165 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 USMG5P1-201ENST00000425964 177 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.78□□□□□ -2.28
SEMA3DO95025 AC091021.1-201ENST00000468051 388 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.78□□□□□ -2.28
SEMA3DO95025 AC046134.1-201ENST00000514454 666 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 Y_RNA.706-201ENST00000516933 99 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 RNU1-54P-201ENST00000517181 120 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.78□□□□□ -2.28
SEMA3DO95025 AC125232.2-201ENST00000592457 143 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 SNORA28-201ENST00000606769 126 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 AC006435.5-201ENST00000624486 112 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 AC068137.4-201ENST00000638485 296 ntBASIC0.78□□□□□ -2.28
SEMA3DO95025 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.78□□□□□ -2.28
SEMA3DO95025 AC005592.1-201ENST00000566527 1640 ntBASIC0.78□□□□□ -2.29
SEMA3DO95025 AC068700.1-201ENST00000565862 3754 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 Y_RNA.9-201ENST00000362354 101 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 RNU4-79P-201ENST00000362764 141 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 Y_RNA.269-201ENST00000364685 89 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 RNU6-407P-201ENST00000365280 104 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 Y_RNA.363-201ENST00000365529 113 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 RNU6-424P-201ENST00000384367 105 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 MIR653-201ENST00000385279 96 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 ELOCP21-201ENST00000412558 336 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 MTCO3P19-201ENST00000415864 321 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 MTND4LP16-201ENST00000440828 295 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 MTND1P17-201ENST00000448961 204 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 OR9P1P-201ENST00000496431 281 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.77□□□□□ -2.29
SEMA3DO95025 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.77□□□□□ -2.29
SEMA3DO95025 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.77□□□□□ -2.29
SEMA3DO95025 MIR4452-201ENST00000583004 71 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 AC012557.2-201ENST00000605919 418 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 AC100812.1-201ENST00000607622 580 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 AC106800.4-201ENST00000614905 153 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 AL357075.2-201ENST00000614906 189 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 MIR6767-201ENST00000637302 66 ntBASIC0.77□□□□□ -2.29
SEMA3DO95025 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
SEMA3DO95025 Y_RNA.116-201ENST00000363292 103 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 Y_RNA.301-201ENST00000364990 103 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 RNU4-12P-201ENST00000365233 139 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 Y_RNA.450-201ENST00000384198 113 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 MIR329-1-201ENST00000385028 80 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 RNU6-1054P-201ENST00000411293 104 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 AC009161.1-201ENST00000417306 376 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 AC018865.2-201ENST00000423631 129 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 AC245047.7-201ENST00000440265 293 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 SNORD5.1-201ENST00000458800 75 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 RNU6-1291P-201ENST00000516591 104 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 RNU2-56P-201ENST00000516826 190 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 AC090049.2-201ENST00000550377 109 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 RPL21P9-201ENST00000556149 474 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.76□□□□□ -2.29
SEMA3DO95025 MIR3973-201ENST00000579824 107 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 AC108706.1-201ENST00000611053 297 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 MIR3662-201ENST00000637030 95 ntBASIC0.76□□□□□ -2.29
SEMA3DO95025 MIR373-201ENST00000362273 69 ntBASIC0.75□□□□□ -2.29
SEMA3DO95025 SNORA1B-201ENST00000362535 133 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 175.2 ms