Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.14□□□□□ -2.07
LDB3O75112 RPL23AP94-201ENST00000512518 302 ntBASIC2.14□□□□□ -2.07
LDB3O75112 RNU6-436P-201ENST00000516171 114 ntBASIC2.14□□□□□ -2.07
LDB3O75112 RNU6-107P-201ENST00000516643 102 ntBASIC2.14□□□□□ -2.07
LDB3O75112 CYCSP23-201ENST00000519781 313 ntBASIC2.14□□□□□ -2.07
LDB3O75112 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.14□□□□□ -2.07
LDB3O75112 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.14□□□□□ -2.07
LDB3O75112 AC022616.8-201ENST00000533569 253 ntBASIC2.14□□□□□ -2.07
LDB3O75112 MIR5006-201ENST00000583027 110 ntBASIC2.14□□□□□ -2.07
LDB3O75112 MIR3133-201ENST00000583157 78 ntBASIC2.14□□□□□ -2.07
LDB3O75112 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LDB3O75112 ZNF271P-202ENST00000465539 1970 ntBASIC2.14□□□□□ -2.07
LDB3O75112 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
LDB3O75112 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
LDB3O75112 SNORA67.1-201ENST00000364749 141 ntBASIC2.13□□□□□ -2.07
LDB3O75112 RNU6-211P-201ENST00000384047 107 ntBASIC2.13□□□□□ -2.07
LDB3O75112 RNU6-514P-201ENST00000384208 107 ntBASIC2.13□□□□□ -2.07
LDB3O75112 OOSP1P1-201ENST00000423265 274 ntBASIC2.13□□□□□ -2.07
LDB3O75112 AC009238.1-201ENST00000442165 424 ntBASIC2.13□□□□□ -2.07
LDB3O75112 AC009237.6-201ENST00000446969 424 ntBASIC2.13□□□□□ -2.07
LDB3O75112 Y_RNA.637-201ENST00000459424 114 ntBASIC2.13□□□□□ -2.07
LDB3O75112 RNU5F-4P-201ENST00000516581 114 ntBASIC2.13□□□□□ -2.07
LDB3O75112 RNU6-344P-201ENST00000516635 111 ntBASIC2.13□□□□□ -2.07
LDB3O75112 MIR4446-201ENST00000578505 67 ntBASIC2.13□□□□□ -2.07
LDB3O75112 SNORD14A-201ENST00000606526 91 ntBASIC2.13□□□□□ -2.07
LDB3O75112 AC037487.3-201ENST00000606668 112 ntBASIC2.13□□□□□ -2.07
LDB3O75112 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.13□□□□□ -2.07
LDB3O75112 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.13□□□□□ -2.07
LDB3O75112 AC021753.1-201ENST00000635724 168 ntBASIC2.13□□□□□ -2.07
LDB3O75112 U2.22-201ENST00000636441 106 ntBASIC2.13□□□□□ -2.07
LDB3O75112 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
LDB3O75112 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
LDB3O75112 AL157777.2-201ENST00000258070 137 ntBASIC2.12□□□□□ -2.07
LDB3O75112 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
LDB3O75112 RNU6-653P-201ENST00000363074 106 ntBASIC2.12□□□□□ -2.07
LDB3O75112 RNU1-23P-201ENST00000363361 144 ntBASIC2.12□□□□□ -2.07
LDB3O75112 RNU1-91P-201ENST00000364746 163 ntBASIC2.12□□□□□ -2.07
LDB3O75112 RNU6-234P-201ENST00000365229 104 ntBASIC2.12□□□□□ -2.07
LDB3O75112 RNU6-125P-201ENST00000384505 107 ntBASIC2.12□□□□□ -2.07
LDB3O75112 RNA5SP508-201ENST00000411327 119 ntBASIC2.12□□□□□ -2.07
LDB3O75112 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.12□□□□□ -2.07
LDB3O75112 AC024067.1-201ENST00000426199 223 ntBASIC2.12□□□□□ -2.07
LDB3O75112 U8.19-201ENST00000459095 133 ntBASIC2.12□□□□□ -2.07
LDB3O75112 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.12□□□□□ -2.07
LDB3O75112 HMGB3P3-201ENST00000510526 400 ntBASIC2.12□□□□□ -2.07
LDB3O75112 RNU6-1219P-201ENST00000516143 112 ntBASIC2.12□□□□□ -2.07
LDB3O75112 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.12□□□□□ -2.07
LDB3O75112 SNORA31.15-201ENST00000516771 132 ntBASIC2.12□□□□□ -2.07
LDB3O75112 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.12□□□□□ -2.07
LDB3O75112 CYCSP26-201ENST00000534107 320 ntBASIC2.12□□□□□ -2.07
LDB3O75112 SNORD53-201ENST00000579969 78 ntBASIC2.12□□□□□ -2.07
LDB3O75112 AC245884.12-201ENST00000615364 59 ntBASIC2.12□□□□□ -2.07
LDB3O75112 AL365265.1-201ENST00000621045 234 ntBASIC2.12□□□□□ -2.07
LDB3O75112 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
LDB3O75112 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
LDB3O75112 RNU6-1020P-201ENST00000363684 107 ntBASIC2.11□□□□□ -2.07
LDB3O75112 RNU6-1048P-201ENST00000364054 107 ntBASIC2.11□□□□□ -2.07
LDB3O75112 SNORD115-30-201ENST00000364117 82 ntBASIC2.11□□□□□ -2.07
LDB3O75112 RNU1-138P-201ENST00000384093 164 ntBASIC2.11□□□□□ -2.07
LDB3O75112 Y_RNA.506-201ENST00000384494 102 ntBASIC2.11□□□□□ -2.07
LDB3O75112 MIR221-201ENST00000385135 110 ntBASIC2.11□□□□□ -2.07
LDB3O75112 MIR548B-201ENST00000385247 97 ntBASIC2.11□□□□□ -2.07
LDB3O75112 U3.40-201ENST00000408706 208 ntBASIC2.11□□□□□ -2.07
LDB3O75112 BTF3P11-201ENST00000426582 477 ntBASIC2.11□□□□□ -2.07
LDB3O75112 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.11□□□□□ -2.07
LDB3O75112 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.11□□□□□ -2.07
LDB3O75112 RNU7-14P-201ENST00000459331 62 ntBASIC2.11□□□□□ -2.07
LDB3O75112 COX6CP14-201ENST00000469580 174 ntBASIC2.11□□□□□ -2.07
LDB3O75112 RNU6-965P-201ENST00000516721 96 ntBASIC2.11□□□□□ -2.07
LDB3O75112 RNU6-1098P-201ENST00000516772 96 ntBASIC2.11□□□□□ -2.07
LDB3O75112 MTND5P41-201ENST00000517498 206 ntBASIC2.11□□□□□ -2.07
LDB3O75112 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LDB3O75112 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.11□□□□□ -2.07
LDB3O75112 AL137100.2-201ENST00000555786 315 ntBASIC2.11□□□□□ -2.07
LDB3O75112 MIR4435-1-201ENST00000582552 80 ntBASIC2.11□□□□□ -2.07
LDB3O75112 Z83818.1-201ENST00000603584 150 ntBASIC2.11□□□□□ -2.07
LDB3O75112 SNORD11B-201ENST00000607707 90 ntBASIC2.11□□□□□ -2.07
LDB3O75112 AC068205.3-201ENST00000636385 468 ntBASIC2.11□□□□□ -2.07
LDB3O75112 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.11□□□□□ -2.07
LDB3O75112 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LDB3O75112 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
LDB3O75112 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
LDB3O75112 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-1272P-201ENST00000362776 107 ntBASIC2.1□□□□□ -2.07
LDB3O75112 Y_RNA.170-201ENST00000363746 110 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-801P-201ENST00000364087 105 ntBASIC2.1□□□□□ -2.07
LDB3O75112 SNORA3A-201ENST00000364113 130 ntBASIC2.1□□□□□ -2.07
LDB3O75112 Y_RNA.233-201ENST00000364407 101 ntBASIC2.1□□□□□ -2.07
LDB3O75112 SNORA25B-201ENST00000365507 128 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-1264P-201ENST00000383891 107 ntBASIC2.1□□□□□ -2.07
LDB3O75112 Y_RNA.464-201ENST00000384282 110 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-804P-201ENST00000384286 107 ntBASIC2.1□□□□□ -2.07
LDB3O75112 MIR524-201ENST00000385242 87 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-763P-201ENST00000390865 106 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNA5SP475-201ENST00000410568 110 ntBASIC2.1□□□□□ -2.07
LDB3O75112 AC018868.1-201ENST00000491307 315 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-346P-201ENST00000516288 111 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-406P-201ENST00000516470 107 ntBASIC2.1□□□□□ -2.07
LDB3O75112 RNU6-1212P-201ENST00000517023 104 ntBASIC2.1□□□□□ -2.07
LDB3O75112 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms