Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 RNU6-1001P-201ENST00000411265 100 ntBASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 RNU6-559P-201ENST00000516151 98 ntBASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 AC024995.1-201ENST00000523014 93 ntBASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 MIR4419B-201ENST00000577260 68 ntBASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.59□□□□□ -2.15
PCDHGA1Q9Y5H4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
PCDHGA1Q9Y5H4 Y_RNA.358-201ENST00000365491 99 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-439P-201ENST00000384188 106 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-950P-201ENST00000384651 107 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU1-98P-201ENST00000458992 160 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 U8.22-201ENST00000459141 133 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 snoU13.18-201ENST00000459483 104 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 AC091951.2-201ENST00000500762 203 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-277P-201ENST00000516272 106 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 AC091144.1-201ENST00000519573 138 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 AC024614.2-201ENST00000577584 372 ntBASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
PCDHGA1Q9Y5H4 SNORA33-201ENST00000363664 130 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-60P-201ENST00000364792 103 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 Y_RNA.387-201ENST00000383918 102 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 Y_RNA.577-201ENST00000384794 101 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR517C-201ENST00000385103 95 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 SNORA67.6-201ENST00000391093 99 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 RNA5SP467-201ENST00000391274 118 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR1276-201ENST00000408707 83 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 HSPE1P24-201ENST00000450782 238 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-120P-201ENST00000516077 103 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-264P-201ENST00000517134 104 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 RNA5SP437-201ENST00000517249 129 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 FRG2DP-202ENST00000566967 323 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 SNORA77B-201ENST00000578179 125 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR1244-1-201ENST00000612829 85 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR6504-201ENST00000613520 61 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR1244-3-201ENST00000635744 85 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR1244-2-201ENST00000636449 85 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR1244-4-202ENST00000636813 85 ntBASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU1-42P-201ENST00000364033 160 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-879P-201ENST00000364328 108 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-1156P-201ENST00000410365 100 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-1304P-201ENST00000411374 106 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 ELOCP21-201ENST00000412558 336 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 COX6CP10-201ENST00000416832 224 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 TOMM22P2-201ENST00000430735 237 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 PCNPP5-201ENST00000452246 481 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 Y_RNA.653-201ENST00000459091 95 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR2053-201ENST00000459295 91 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 AC005908.1-201ENST00000468701 347 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 AC022493.2-201ENST00000506122 481 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 FGF7P4-201ENST00000509595 295 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 AC074133.1-201ENST00000515696 183 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-875P-201ENST00000516488 106 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-107P-201ENST00000516643 102 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 RN7SKP49-201ENST00000516675 260 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 MIR2355-201ENST00000517199 87 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 AC080078.3-201ENST00000605407 463 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 AL132765.2-201ENST00000610812 351 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.56□□□□□ -2.16
PCDHGA1Q9Y5H4 ICE2P2-201ENST00000483823 2787 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 RNA5SP361-201ENST00000362686 118 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 SNORD48-201ENST00000364953 64 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 RNA5SP363-201ENST00000365072 115 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-890P-201ENST00000384121 107 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-1297P-201ENST00000384415 104 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 MTCYBP4-201ENST00000401524 249 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 MTCO3P10-201ENST00000455912 772 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-470P-201ENST00000515954 104 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 AC022868.1-201ENST00000517767 391 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 AL645939.4-201ENST00000604495 135 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 AL357075.2-201ENST00000614906 189 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 AC104260.1-201ENST00000616660 539 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 AC087588.2-201ENST00000617667 426 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 U6.108-201ENST00000637764 58 ntBASIC1.55□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-1266P-201ENST00000362794 105 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 SNORA7.1-201ENST00000363750 139 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 RNU6-318P-201ENST00000384283 103 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AC114482.1-201ENST00000418010 247 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 AC073910.1-201ENST00000445047 438 ntBASIC1.54□□□□□ -2.16
PCDHGA1Q9Y5H4 UQCRBP2-201ENST00000447827 297 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms