Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SNORD56.3-201ENST00000363507 71 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 SNORA72-201ENST00000384339 132 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 AL158147.1-201ENST00000443970 75 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 PRSS3P4-201ENST00000453323 162 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 RNU6-1299P-201ENST00000516316 100 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 Y_RNA.692-201ENST00000516627 105 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 RNU2-60P-201ENST00000517290 128 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 AL929325.1-201ENST00000603096 117 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 uc_338.25-201ENST00000613756 156 ntBASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
AP4E1Q9UPM8 RNU1-105P-201ENST00000363470 161 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 SNORA14A-201ENST00000364773 135 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 RNU6-1235P-201ENST00000384559 107 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 MLLT10P1-201ENST00000418346 262 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 AC005326.1-201ENST00000429197 123 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 AL357134.1-201ENST00000445848 426 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 AC245102.2-201ENST00000448956 180 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 RNU6-498P-201ENST00000459468 107 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 RNA5SP217-201ENST00000515959 91 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 SNORD77.4-201ENST00000516158 81 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 SCARNA17.1-201ENST00000516211 143 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 SCARNA17.2-201ENST00000516334 143 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 RNU6-711P-201ENST00000517255 106 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 AC018630.3-201ENST00000542637 96 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 SCARNA17.4-201ENST00000614296 143 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 MTND5P32-201ENST00000560711 1802 ntBASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
AP4E1Q9UPM8 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 AC138915.1-201ENST00000565427 1685 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 RNA5SP383-201ENST00000362934 120 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 Y_RNA.91-201ENST00000363042 107 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 RNA5SP267-201ENST00000364893 126 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 RNA5SP171-201ENST00000391071 115 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 Y_RNA.630-201ENST00000411370 108 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 AC063976.4-201ENST00000421971 163 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 AC009414.1-201ENST00000427200 443 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 RPL30P4-201ENST00000429309 333 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 SNORD11-201ENST00000459124 84 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 RNU5E-3P-201ENST00000515913 68 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 RNA5SP153-201ENST00000516498 76 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 SNORD59.2-201ENST00000516873 68 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 MIR3121-201ENST00000579680 77 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 AC131055.1-201ENST00000584626 316 ntBASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
AP4E1Q9UPM8 RNU6-486P-201ENST00000363116 107 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 RNA5SP72-201ENST00000364442 117 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 RNU6-1080P-201ENST00000383982 107 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 RNU6-1083P-201ENST00000384022 107 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 MIR181A2-201ENST00000384863 110 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 RPL39P40-201ENST00000445481 146 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 RN7SL601P-201ENST00000471221 293 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 MIR3944-201ENST00000581277 108 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 AC108081.1-201ENST00000604358 221 ntBASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
AP4E1Q9UPM8 Z82209.1-201ENST00000422141 2135 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 Y_RNA.114-201ENST00000363265 113 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 RNU1-22P-201ENST00000363334 158 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 RNU4-13P-201ENST00000364019 141 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 Y_RNA.634-201ENST00000364811 113 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 RNU6-418P-201ENST00000384035 107 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 RNVU1-14-201ENST00000384770 164 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 RPL32P35-201ENST00000415214 394 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 AC008134.1-201ENST00000420943 193 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 AC006028.1-201ENST00000438379 402 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 AC080013.2-201ENST00000460866 323 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 RNU6-948P-201ENST00000516374 107 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 AC090115.4-201ENST00000609970 188 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 uc_338.4-201ENST00000616635 176 ntBASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.29□□□□□ -1.88
AP4E1Q9UPM8 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 Y_RNA.203-201ENST00000364106 102 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 SNORD58C-201ENST00000365223 64 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 SNORA22-201ENST00000383907 134 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 RNU6-147P-201ENST00000383983 107 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 RPS4XP11-201ENST00000446897 772 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 RN7SL863P-201ENST00000462370 296 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 RPS27P22-201ENST00000478056 241 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 RNA5SP170-201ENST00000517150 101 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 RPL23AP91-201ENST00000569211 455 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 MIR7112-201ENST00000616126 65 ntBASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
AP4E1Q9UPM8 Y_RNA.796-201ENST00000364268 102 ntBASIC3.27□□□□□ -1.89
AP4E1Q9UPM8 Y_RNA.799-201ENST00000364992 102 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms