Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RPL17P19-201ENST00000489069 552 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.4□□□□□ -2.19
DDX28Q9NUL7 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.4□□□□□ -2.19
DDX28Q9NUL7 RNU7-99P-201ENST00000516271 62 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 SCARNA16.2-201ENST00000516520 172 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 AL359821.1-201ENST00000605519 182 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 MIR7974-201ENST00000615835 79 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 MIR8063-201ENST00000621930 81 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.4□□□□□ -2.19
DDX28Q9NUL7 SNORD33-201ENST00000362761 85 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 SNORD81.2-201ENST00000365153 76 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 SNORD26-201ENST00000384147 75 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 RNU6-1186P-201ENST00000410429 97 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 AP1B1P2-201ENST00000416196 106 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 RPS27P1-201ENST00000450552 247 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 RPS26P55-201ENST00000471178 356 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 AC010598.1-201ENST00000510378 103 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 AC074133.1-201ENST00000515696 183 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.39□□□□□ -2.19
DDX28Q9NUL7 AC008269.2-201ENST00000561915 1105 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 AC004584.2-201ENST00000570407 410 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 TPTEP1-208ENST00000636884 213 ntBASIC1.39□□□□□ -2.19
DDX28Q9NUL7 RNU6-879P-201ENST00000364328 108 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 RNU6-1264P-201ENST00000383891 107 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 MIR320A-201ENST00000385302 82 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 ELOCP21-201ENST00000412558 336 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC004965.1-201ENST00000413033 213 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC092423.1-201ENST00000430165 186 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 UQCRBP2-201ENST00000447827 297 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 PCNPP5-201ENST00000452246 481 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC005840.1-201ENST00000498412 377 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC079140.2-201ENST00000506193 142 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 RNA5SP445-201ENST00000515889 115 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 RNU7-128P-201ENST00000517247 62 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.38□□□□□ -2.19
DDX28Q9NUL7 DNAJC19P9-201ENST00000555084 351 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC015688.6-201ENST00000577737 104 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 MIR3684-201ENST00000579779 74 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AC104260.1-201ENST00000616660 539 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
DDX28Q9NUL7 AL669831.3-213ENST00000636676 183 ntBASIC1.38□□□□□ -2.19
DDX28Q9NUL7 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
DDX28Q9NUL7 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.38□□□□□ -2.19
DDX28Q9NUL7 RNU1-42P-201ENST00000364033 160 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 Y_RNA.269-201ENST00000364685 89 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 SNORA25.9-201ENST00000365087 128 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 Y_RNA.358-201ENST00000365491 99 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 RNU4-14P-201ENST00000410858 122 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 AC005002.2-201ENST00000438228 269 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 AL606517.2-201ENST00000442855 241 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 AC009474.2-201ENST00000451383 136 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 RNU7-34P-201ENST00000459394 64 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.37□□□□□ -2.19
DDX28Q9NUL7 PRDX4P1-201ENST00000507189 574 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 RN7SKP49-201ENST00000516675 260 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 MIR2355-201ENST00000517199 87 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 RNU6-902P-201ENST00000517212 91 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 MIR5690-201ENST00000583739 73 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 AC022217.4-201ENST00000604389 163 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 AP001485.1-201ENST00000604799 199 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 BX248123.2-201ENST00000606318 124 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.37□□□□□ -2.19
DDX28Q9NUL7 AC006026.1-201ENST00000444025 1803 ntBASIC1.37□□□□□ -2.19
DDX28Q9NUL7 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
DDX28Q9NUL7 Y_RNA.498-201ENST00000384460 102 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 MIR499A-201ENST00000384903 122 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 MTCYBP4-201ENST00000401524 249 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 RN7SKP200-201ENST00000410564 320 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC138393.2-201ENST00000414742 246 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC027119.1-201ENST00000440877 241 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 U8.22-201ENST00000459141 133 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 RNU7-94P-201ENST00000459576 63 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC022868.1-201ENST00000517767 391 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AL442163.3-201ENST00000554110 156 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.36□□□□□ -2.19
DDX28Q9NUL7 MIR4438-201ENST00000585271 93 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AL929325.1-201ENST00000603096 117 ntBASIC1.36□□□□□ -2.19
DDX28Q9NUL7 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.35□□□□□ -2.19
DDX28Q9NUL7 MIR410-201ENST00000362222 80 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 MIR26B-201ENST00000362251 77 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 RNA5SP361-201ENST00000362686 118 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AC098614.3-201ENST00000438957 440 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 RBMX2P4-201ENST00000441256 376 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 MRPS10P1-201ENST00000448483 130 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 MTND4P17-201ENST00000470444 350 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 RPS27P22-201ENST00000478056 241 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AC099513.1-201ENST00000490423 301 ntBASIC1.35□□□□□ -2.19
DDX28Q9NUL7 AC010469.2-201ENST00000496412 480 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms