Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SNORA16.1-201ENST00000364597 132 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 Y_RNA.799-201ENST00000364992 102 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 AC022028.1-201ENST00000412054 408 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 AC245047.4-201ENST00000433189 144 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 RNU7-95P-201ENST00000459222 64 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.54□□□□□ -2.16
LIME1Q9H400 RNU6-976P-201ENST00000516086 111 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 AC022868.1-201ENST00000517767 391 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.54□□□□□ -2.16
LIME1Q9H400 AL442163.3-201ENST00000554110 156 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 DNAJC19P9-201ENST00000555084 351 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 AC069114.2-201ENST00000604699 304 ntBASIC1.54□□□□□ -2.16
LIME1Q9H400 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
LIME1Q9H400 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
LIME1Q9H400 Y_RNA.5-201ENST00000362334 102 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 RNU6-862P-201ENST00000362804 105 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 RNU6-112P-201ENST00000363599 104 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 RNU6-879P-201ENST00000364328 108 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 RNU1-115P-201ENST00000365329 160 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 Y_RNA.395-201ENST00000383945 109 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 RNU6-296P-201ENST00000384608 107 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 MIR518E-201ENST00000385252 88 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 RNA5SP212-201ENST00000391223 107 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AC114482.1-201ENST00000418010 247 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AC018865.2-201ENST00000423631 129 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.53□□□□□ -2.16
LIME1Q9H400 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.53□□□□□ -2.16
LIME1Q9H400 UQCRBP2-201ENST00000447827 297 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 CHEK2P4-201ENST00000450340 246 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 SNORA40.9-201ENST00000515895 93 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 RNU6-1041P-201ENST00000516254 102 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 Y_RNA.675-201ENST00000516389 149 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AC144568.1-201ENST00000520139 137 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 MIR4419B-201ENST00000577260 68 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AC012493.3-201ENST00000604494 112 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AC104985.2-201ENST00000620598 500 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AC006001.4-201ENST00000622243 395 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 AC091932.3-201ENST00000624223 323 ntBASIC1.53□□□□□ -2.16
LIME1Q9H400 Y_RNA.112-201ENST00000363250 102 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 RNU1-96P-201ENST00000364163 162 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 Y_RNA.224-201ENST00000364308 111 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 SNORA63D-201ENST00000364359 132 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 Y_RNA.287-201ENST00000364853 94 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 Y_RNA.466-201ENST00000384294 113 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 MIR515-2-201ENST00000384883 83 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 MIR515-1-201ENST00000384884 83 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 Y_RNA.579-201ENST00000390939 94 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.52□□□□□ -2.17
LIME1Q9H400 Y_RNA.639-201ENST00000458981 102 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 RPL26P26-201ENST00000480251 434 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 AC010409.1-201ENST00000487382 476 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 HMGB3P17-201ENST00000504195 649 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 MRPS17P9-201ENST00000511924 393 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 AP002001.1-203ENST00000534002 267 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 AC018448.1-201ENST00000552843 316 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 MIR5094-201ENST00000578766 85 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 MIR4713-201ENST00000582691 75 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 AC022432.1-201ENST00000595739 310 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 AL050343.2-201ENST00000607338 280 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 U2.1-201ENST00000618978 145 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 MIR4272-201ENST00000635924 64 ntBASIC1.52□□□□□ -2.17
LIME1Q9H400 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.52□□□□□ -2.17
LIME1Q9H400 SNORA33-201ENST00000363664 130 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 Y_RNA.197-201ENST00000364004 102 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 RNU6-1019P-201ENST00000364424 107 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 SNORA72.2-201ENST00000365028 127 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 RNU6-1240P-201ENST00000365155 104 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 SNORD42.2-201ENST00000365570 69 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 Y_RNA.428-201ENST00000384078 102 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
LIME1Q9H400 AL137792.2-201ENST00000443484 235 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 PCNPP5-201ENST00000452246 481 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 RNU6-1146P-201ENST00000516282 102 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.51□□□□□ -2.17
LIME1Q9H400 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.51□□□□□ -2.17
LIME1Q9H400 AC005828.6-201ENST00000606610 232 ntBASIC1.51□□□□□ -2.17
LIME1Q9H400 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
LIME1Q9H400 Y_RNA.61-201ENST00000362835 102 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 RNY3P11-201ENST00000364153 102 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 Y_RNA.314-201ENST00000365114 102 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 Y_RNA.431-201ENST00000384086 102 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 SNORA67.5-201ENST00000391036 107 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 SNORD12B-201ENST00000410433 91 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 RAB28P5-201ENST00000427490 651 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.5□□□□□ -2.17
LIME1Q9H400 RPS26P45-201ENST00000471748 340 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 AC107393.1-201ENST00000512403 346 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 RNU6-1012P-201ENST00000516606 109 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 SNORD116.3-201ENST00000517176 78 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 RNU7-128P-201ENST00000517247 62 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 AC024995.1-201ENST00000523014 93 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.5□□□□□ -2.17
LIME1Q9H400 AL080274.1-201ENST00000605565 220 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 MIR502-201ENST00000606349 86 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 AC103810.8-201ENST00000607347 118 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms