Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC011406.1-201ENST00000512440 370 ntBASIC2.56□□□□□ -2
NUP88Q99567 RNU6-1146P-201ENST00000516282 102 ntBASIC2.56□□□□□ -2
NUP88Q99567 SNORA31.11-201ENST00000516528 139 ntBASIC2.56□□□□□ -2
NUP88Q99567 AL117187.1-201ENST00000555482 181 ntBASIC2.56□□□□□ -2
NUP88Q99567 AL049779.4-201ENST00000604500 156 ntBASIC2.56□□□□□ -2
NUP88Q99567 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.56□□□□□ -2
NUP88Q99567 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.56□□□□□ -2
NUP88Q99567 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
NUP88Q99567 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NUP88Q99567 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
NUP88Q99567 Y_RNA.64-201ENST00000362845 102 ntBASIC2.55□□□□□ -2
NUP88Q99567 RNU6-806P-201ENST00000365147 105 ntBASIC2.55□□□□□ -2
NUP88Q99567 SNORD63-201ENST00000384262 68 ntBASIC2.55□□□□□ -2
NUP88Q99567 RPL21P1-201ENST00000399532 476 ntBASIC2.55□□□□□ -2
NUP88Q99567 SNORA11.4-201ENST00000408823 129 ntBASIC2.55□□□□□ -2
NUP88Q99567 RNU2-54P-201ENST00000410299 190 ntBASIC2.55□□□□□ -2
NUP88Q99567 AC060773.1-201ENST00000421698 310 ntBASIC2.55□□□□□ -2
NUP88Q99567 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
NUP88Q99567 AL731563.1-201ENST00000442202 214 ntBASIC2.55□□□□□ -2
NUP88Q99567 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.55□□□□□ -2
NUP88Q99567 LINC01399-202ENST00000458450 244 ntBASIC2.55□□□□□ -2
NUP88Q99567 UBL5P3-201ENST00000475112 231 ntBASIC2.55□□□□□ -2
NUP88Q99567 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.55□□□□□ -2
NUP88Q99567 SEPT14P8-201ENST00000508026 178 ntBASIC2.55□□□□□ -2
NUP88Q99567 AC107222.1-201ENST00000510899 637 ntBASIC2.55□□□□□ -2
NUP88Q99567 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.55□□□□□ -2
NUP88Q99567 MIR4529-201ENST00000578110 78 ntBASIC2.55□□□□□ -2
NUP88Q99567 MIR3684-201ENST00000579779 74 ntBASIC2.55□□□□□ -2
NUP88Q99567 MIR4524B-201ENST00000581569 115 ntBASIC2.55□□□□□ -2
NUP88Q99567 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.55□□□□□ -2
NUP88Q99567 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.55□□□□□ -2
NUP88Q99567 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.55□□□□□ -2
NUP88Q99567 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NUP88Q99567 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
NUP88Q99567 Y_RNA.574-201ENST00000384766 95 ntBASIC2.54□□□□□ -2
NUP88Q99567 MIR504-201ENST00000385065 83 ntBASIC2.54□□□□□ -2
NUP88Q99567 RNU6-1109P-201ENST00000391187 107 ntBASIC2.54□□□□□ -2
NUP88Q99567 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.54□□□□□ -2
NUP88Q99567 RPL23AP3-201ENST00000453844 468 ntBASIC2.54□□□□□ -2
NUP88Q99567 HMGB3P3-201ENST00000510526 400 ntBASIC2.54□□□□□ -2
NUP88Q99567 AP003733.2-201ENST00000529409 171 ntBASIC2.54□□□□□ -2
NUP88Q99567 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.54□□□□□ -2
NUP88Q99567 MIR4769-201ENST00000584126 77 ntBASIC2.54□□□□□ -2
NUP88Q99567 AC005034.5-201ENST00000604219 466 ntBASIC2.54□□□□□ -2
NUP88Q99567 PRR13P7-201ENST00000605538 430 ntBASIC2.54□□□□□ -2
NUP88Q99567 AC022441.3-201ENST00000605737 136 ntBASIC2.54□□□□□ -2
NUP88Q99567 SNORD113-5-201ENST00000607261 78 ntBASIC2.54□□□□□ -2
NUP88Q99567 AC245884.12-201ENST00000615364 59 ntBASIC2.54□□□□□ -2
NUP88Q99567 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.54□□□□□ -2
NUP88Q99567 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.53□□□□□ -2
NUP88Q99567 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.53□□□□□ -2
NUP88Q99567 ZNF720P1-201ENST00000562403 1939 ntBASIC2.53□□□□□ -2
NUP88Q99567 Y_RNA.26-201ENST00000362539 101 ntBASIC2.53□□□□□ -2
NUP88Q99567 SNORD114-1-201ENST00000362705 72 ntBASIC2.53□□□□□ -2
NUP88Q99567 Y_RNA.105-201ENST00000363182 111 ntBASIC2.53□□□□□ -2
NUP88Q99567 RNU6-407P-201ENST00000365280 104 ntBASIC2.53□□□□□ -2
NUP88Q99567 Y_RNA.512-201ENST00000384518 102 ntBASIC2.53□□□□□ -2
NUP88Q99567 SNORA80E-201ENST00000384744 137 ntBASIC2.53□□□□□ -2
NUP88Q99567 RNU6-1105P-201ENST00000384774 107 ntBASIC2.53□□□□□ -2
NUP88Q99567 snosnR66.1-201ENST00000391095 99 ntBASIC2.53□□□□□ -2
NUP88Q99567 RNA5SP465-201ENST00000391195 109 ntBASIC2.53□□□□□ -2
NUP88Q99567 AC016909.1-201ENST00000415916 166 ntBASIC2.53□□□□□ -2
NUP88Q99567 RPL21P38-201ENST00000418090 167 ntBASIC2.53□□□□□ -2
NUP88Q99567 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.53□□□□□ -2
NUP88Q99567 HMGN2P3-201ENST00000433603 273 ntBASIC2.53□□□□□ -2
NUP88Q99567 HMGN2P5-201ENST00000436882 273 ntBASIC2.53□□□□□ -2
NUP88Q99567 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.53□□□□□ -2
NUP88Q99567 MIR3169-201ENST00000578032 83 ntBASIC2.53□□□□□ -2
NUP88Q99567 MIR4423-201ENST00000580922 80 ntBASIC2.53□□□□□ -2
NUP88Q99567 AC008749.1-201ENST00000597650 306 ntBASIC2.53□□□□□ -2
NUP88Q99567 U6.115-201ENST00000636045 103 ntBASIC2.53□□□□□ -2
NUP88Q99567 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
NUP88Q99567 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2.01
NUP88Q99567 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
NUP88Q99567 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
NUP88Q99567 RNU6-417P-201ENST00000384712 107 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 MIR764-201ENST00000390811 85 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 SNORD115-46-201ENST00000390982 71 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 MIR548F4-201ENST00000408515 105 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 RNU6-121P-201ENST00000410525 99 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.52□□□□□ -2.01
NUP88Q99567 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.52□□□□□ -2.01
NUP88Q99567 AL358176.2-201ENST00000425769 204 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 POLR2KP2-201ENST00000438155 177 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.52□□□□□ -2.01
NUP88Q99567 SNORD65B-201ENST00000459126 73 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 RPS27P22-201ENST00000478056 241 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 AC098869.1-201ENST00000481627 292 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 RNU6-570P-201ENST00000517051 105 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 RNU2-12P-201ENST00000517216 168 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.52□□□□□ -2.01
NUP88Q99567 AL162730.1-201ENST00000605734 292 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 AC009831.4-201ENST00000620744 325 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 SDR42E1P4-201ENST00000620894 481 ntBASIC2.52□□□□□ -2.01
NUP88Q99567 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
NUP88Q99567 Y_RNA.47-201ENST00000362697 108 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 snoU2-30.2-201ENST00000362805 70 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 SNORA20B-201ENST00000384220 132 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 MIR1302-3-201ENST00000408128 138 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 U3.40-201ENST00000408706 208 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms