Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORD45.3-201ENST00000363836 72 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.215-201ENST00000364204 112 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 RNU4-11P-201ENST00000365287 132 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.343-201ENST00000365354 112 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 RNU6-643P-201ENST00000384018 107 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 RNY3P5-201ENST00000384127 102 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 RNU1-148P-201ENST00000384472 162 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 SNORD37.2-201ENST00000391075 66 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 AL606753.1-201ENST00000427435 87 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 TRBV12-1-201ENST00000479785 344 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 RNU7-121P-201ENST00000516604 62 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 MIR3169-201ENST00000578032 83 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 AL353149.1-201ENST00000610667 244 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 JPX_2.1-201ENST00000614161 69 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 AC012640.5-201ENST00000623897 319 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 MIR3658-201ENST00000636291 56 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 AC132825.6-201ENST00000638861 357 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 AC100821.1-201ENST00000523153 2479 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 FAM35CP-201ENST00000554755 2470 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 MFSD8-233ENST00000641482 4860 ntBASIC2.71□□□□□ -1.98
CCDC140Q96MF4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 ZNF271P-202ENST00000465539 1970 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC140Q96MF4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC140Q96MF4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC140Q96MF4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC140Q96MF4 SNORD46.1-201ENST00000364139 104 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 RNU6-704P-201ENST00000364162 103 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.796-201ENST00000364268 102 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.799-201ENST00000364992 102 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 SNORA11.1-201ENST00000408133 129 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 SNORA79-201ENST00000408376 140 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 BMS1P22-201ENST00000414726 313 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 MLLT10P1-201ENST00000418346 262 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 BX510359.4-201ENST00000423750 193 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AC063976.3-201ENST00000426849 329 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AC026403.1-201ENST00000518938 295 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AC091178.2-201ENST00000584401 117 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 DNAJC19P2-201ENST00000593340 302 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AP001485.1-201ENST00000604799 199 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AC093908.1-201ENST00000623125 8092 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AC009093.8-201ENST00000641769 292 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 ZNF702P-202ENST00000434269 1966 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AC018630.2-201ENST00000534866 2403 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 AP006437.1-201ENST00000641440 3685 ntBASIC2.7□□□□□ -1.98
CCDC140Q96MF4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC140Q96MF4 RNU6-199P-201ENST00000362954 107 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 SNORA73.2-201ENST00000364946 201 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 SNORA70.4-201ENST00000365509 134 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 DYNLT3P1-201ENST00000378574 347 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.497-201ENST00000384447 98 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 RNU11-5P-201ENST00000391216 129 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 CYCSP49-201ENST00000420810 319 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 CST2P1-201ENST00000425770 87 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC140Q96MF4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC140Q96MF4 FCF1P8-201ENST00000510322 597 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 RPPH1-2P-201ENST00000516688 293 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 SNORA70.19-201ENST00000516717 90 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 MIR7851-201ENST00000610611 160 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 AC019176.2-201ENST00000611579 315 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 RNVU1-4-201ENST00000612985 164 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 uc_338.4-201ENST00000616635 176 ntBASIC2.69□□□□□ -1.98
CCDC140Q96MF4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC140Q96MF4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC140Q96MF4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC140Q96MF4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.68□□□□□ -1.98
CCDC140Q96MF4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC140Q96MF4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC140Q96MF4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC140Q96MF4 RNA5SP119-201ENST00000362715 117 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.111-201ENST00000363248 100 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 RNU11-3P-201ENST00000391111 133 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 RNU6-131P-201ENST00000391144 107 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC140Q96MF4 AC099677.2-201ENST00000436385 175 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 RNU6-1299P-201ENST00000516316 100 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC140Q96MF4 AL021707.8-201ENST00000609428 183 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 AC091895.1-201ENST00000624494 256 ntBASIC2.68□□□□□ -1.98
CCDC140Q96MF4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC140Q96MF4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 RNU1-58P-201ENST00000362413 163 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 SNORA63.1-201ENST00000362493 131 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.333-201ENST00000365274 102 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 RPS29P4-201ENST00000414733 161 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 AC018634.1-201ENST00000437554 401 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 AC025518.1-201ENST00000479856 347 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms