Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC009238.1-201ENST00000442165 424 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 AC009237.6-201ENST00000446969 424 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 RNU6-965P-201ENST00000516721 96 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 DEFB131C-201ENST00000528817 165 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 AL078604.3-201ENST00000615580 211 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 RNU6-234P-201ENST00000365229 104 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 SNORA25B-201ENST00000365507 128 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 SNORA18.2-201ENST00000383865 132 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 SNORA54-201ENST00000384281 123 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 SNORD20-201ENST00000384550 80 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 SNORA40.19-201ENST00000390846 128 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 RNU6-1248P-201ENST00000391096 64 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 SNORA26.5-201ENST00000391215 123 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 AC004866.1-201ENST00000411748 78 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 AC025750.2-201ENST00000442609 450 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 MIR449C-201ENST00000516047 92 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 MIR3684-201ENST00000579779 74 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 TCL6_2.1-201ENST00000615162 119 ntBASIC2.89□□□□□ -1.95
CLIP3Q96DZ5 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 AC010332.2-201ENST00000613083 1904 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.218-201ENST00000364218 104 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 snoU2_19.4-201ENST00000364329 80 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.261-201ENST00000364631 102 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 RNU6-215P-201ENST00000365169 102 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.415-201ENST00000384012 112 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 MIR181B1-201ENST00000385240 110 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 EEF1A1P41-201ENST00000414667 207 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 SUMO1P4-201ENST00000429430 302 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 CR769767.1-201ENST00000436337 346 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 AC018868.1-201ENST00000491307 315 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 RNU1-143P-201ENST00000516296 146 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 AC009127.3-201ENST00000570531 403 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 MIR548X2-201ENST00000579776 100 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 U1.23-201ENST00000610293 146 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 MIR7106-201ENST00000612419 65 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 RNU1-68P-201ENST00000615382 146 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 U1.39-201ENST00000621562 146 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 AC073476.4-201ENST00000628409 72 ntBASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.88□□□□□ -1.95
CLIP3Q96DZ5 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 RNA5SP475-201ENST00000410568 110 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 RNU2-48P-201ENST00000410694 191 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 EBAG9P1-201ENST00000418955 543 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 MTND4LP9-201ENST00000427694 174 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 AC008267.6-201ENST00000441664 139 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 AC004386.2-201ENST00000441858 148 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 SNORA59A-201ENST00000459326 152 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 AC114982.1-201ENST00000469402 321 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 SCGB1D5P-201ENST00000515134 247 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 RNU5F-4P-201ENST00000516581 114 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 RNU2-44P-201ENST00000516795 194 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 SCARNA20.6-201ENST00000517251 106 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 AC136628.3-201ENST00000521868 290 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 MIR4431-201ENST00000579990 94 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 MIR4658-201ENST00000584344 65 ntBASIC2.87□□□□□ -1.95
CLIP3Q96DZ5 AL355596.1-201ENST00000565399 3996 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 SNORD115-30-201ENST00000364117 82 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 RNU6-1264P-201ENST00000383891 107 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 SNORA18.3-201ENST00000384122 132 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 RNA5SP504-201ENST00000410676 117 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.797-201ENST00000515977 94 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 RNU6-1098P-201ENST00000516772 96 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 RNU6-667P-201ENST00000517186 102 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 AC021269.2-201ENST00000532318 330 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 MIR5006-201ENST00000583027 110 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 AC013791.1-201ENST00000616619 62 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 MIR1248-201ENST00000629190 106 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 MIR3658-201ENST00000636291 56 ntBASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLIP3Q96DZ5 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms