Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 RNU1-58P-201ENST00000362413 163 ntBASIC2.54□□□□□ -2
HPS3Q969F9 RNA5SP493-201ENST00000364115 91 ntBASIC2.54□□□□□ -2
HPS3Q969F9 SNORD114-6-201ENST00000364393 72 ntBASIC2.54□□□□□ -2
HPS3Q969F9 RNU6-1164P-201ENST00000364428 107 ntBASIC2.54□□□□□ -2
HPS3Q969F9 MIR144-201ENST00000384886 86 ntBASIC2.54□□□□□ -2
HPS3Q969F9 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.54□□□□□ -2
HPS3Q969F9 AC096920.1-201ENST00000423991 241 ntBASIC2.54□□□□□ -2
HPS3Q969F9 snoU13.26-201ENST00000459452 105 ntBASIC2.54□□□□□ -2
HPS3Q969F9 HMGB3P3-201ENST00000510526 400 ntBASIC2.54□□□□□ -2
HPS3Q969F9 RNU1-41P-201ENST00000516161 162 ntBASIC2.54□□□□□ -2
HPS3Q969F9 RNU1-48P-201ENST00000516400 162 ntBASIC2.54□□□□□ -2
HPS3Q969F9 RNA5SP281-201ENST00000516504 135 ntBASIC2.54□□□□□ -2
HPS3Q969F9 RNU2-12P-201ENST00000517216 168 ntBASIC2.54□□□□□ -2
HPS3Q969F9 MIR6840-201ENST00000611937 71 ntBASIC2.54□□□□□ -2
HPS3Q969F9 AL590240.4-201ENST00000616908 390 ntBASIC2.54□□□□□ -2
HPS3Q969F9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
HPS3Q969F9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.54□□□□□ -2
HPS3Q969F9 RNU4-90P-201ENST00000362773 141 ntBASIC2.53□□□□□ -2
HPS3Q969F9 Y_RNA.105-201ENST00000363182 111 ntBASIC2.53□□□□□ -2
HPS3Q969F9 RNU6-806P-201ENST00000365147 105 ntBASIC2.53□□□□□ -2
HPS3Q969F9 RNU4-30P-201ENST00000410245 143 ntBASIC2.53□□□□□ -2
HPS3Q969F9 RNU6-121P-201ENST00000410525 99 ntBASIC2.53□□□□□ -2
HPS3Q969F9 MTCYBP9-201ENST00000431021 303 ntBASIC2.53□□□□□ -2
HPS3Q969F9 AL353689.1-201ENST00000438895 199 ntBASIC2.53□□□□□ -2
HPS3Q969F9 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.53□□□□□ -2
HPS3Q969F9 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.53□□□□□ -2
HPS3Q969F9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.53□□□□□ -2
HPS3Q969F9 MIR7843-201ENST00000622274 79 ntBASIC2.53□□□□□ -2
HPS3Q969F9 MIR6766-201ENST00000622641 72 ntBASIC2.53□□□□□ -2
HPS3Q969F9 U6.115-201ENST00000636045 103 ntBASIC2.53□□□□□ -2
HPS3Q969F9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.53□□□□□ -2
HPS3Q969F9 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
HPS3Q969F9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2.01
HPS3Q969F9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HPS3Q969F9 RNU6-324P-201ENST00000363957 106 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 SNORA3A-201ENST00000364113 130 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 Y_RNA.243-201ENST00000364481 109 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 HMGN2P39-201ENST00000398005 273 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 MIR1302-6-201ENST00000408466 90 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 AC060773.1-201ENST00000421698 310 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.52□□□□□ -2.01
HPS3Q969F9 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.52□□□□□ -2.01
HPS3Q969F9 AC010598.1-201ENST00000510378 103 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 AC011406.1-201ENST00000512440 370 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 SUMO2P18-201ENST00000518873 252 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 MIR5007-201ENST00000583098 95 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 MIR8062-201ENST00000621515 85 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 ZNF658B-202ENST00000615961 3375 ntBASIC2.52□□□□□ -2.01
HPS3Q969F9 MTND5P6-201ENST00000422338 1798 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 Y_RNA.26-201ENST00000362539 101 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 RNU6-271P-201ENST00000363858 105 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 Y_RNA.222-201ENST00000364264 102 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 SNORA80E-201ENST00000384744 137 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 MIR518A2-201ENST00000384966 87 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 Y_RNA.581-201ENST00000391017 97 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 RNU11-3P-201ENST00000391111 133 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 RNA5SP425-201ENST00000410336 112 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 RPL21P38-201ENST00000418090 167 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.51□□□□□ -2.01
HPS3Q969F9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.51□□□□□ -2.01
HPS3Q969F9 ATP5J2P3-201ENST00000451550 258 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 SNORD65B-201ENST00000459126 73 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 SNORA70.12-201ENST00000516084 153 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 RNU6-496P-201ENST00000516145 99 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.51□□□□□ -2.01
HPS3Q969F9 SDR42E1P4-201ENST00000620894 481 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 AC006435.5-201ENST00000624486 112 ntBASIC2.51□□□□□ -2.01
HPS3Q969F9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
HPS3Q969F9 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.51□□□□□ -2.01
HPS3Q969F9 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.5□□□□□ -2.01
HPS3Q969F9 RNU6-196P-201ENST00000384315 107 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 Y_RNA.556-201ENST00000384677 113 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 RNA5SP465-201ENST00000391195 109 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U3.40-201ENST00000408706 208 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 BX510359.4-201ENST00000423750 193 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 AC024067.1-201ENST00000426199 223 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 HMGN2P34-201ENST00000437647 269 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 POLR2KP2-201ENST00000438155 177 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 HMGN1P10-201ENST00000474557 553 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 AC098869.1-201ENST00000481627 292 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 HMGB3P17-201ENST00000504195 649 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 RNU6-1041P-201ENST00000516254 102 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.5□□□□□ -2.01
HPS3Q969F9 MIR3169-201ENST00000578032 83 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 MIR4529-201ENST00000578110 78 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.15-201ENST00000611544 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.16-201ENST00000613119 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.12-201ENST00000613778 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.20-201ENST00000613956 192 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.9-201ENST00000615427 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.11-201ENST00000616345 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.2-201ENST00000616535 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.3-201ENST00000617785 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.19-201ENST00000618602 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 RNU2-1-201ENST00000618664 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.6-201ENST00000619225 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.5-201ENST00000619465 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 U2.10-201ENST00000620268 191 ntBASIC2.5□□□□□ -2.01
HPS3Q969F9 SNORD115-30-201ENST00000364117 82 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms