Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 AC022306.2-201ENST00000617563 647 ntBASIC1.65□□□□□ -2.15
PRPF39Q86UA1 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
PRPF39Q86UA1 AC073544.1-201ENST00000600110 1595 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.64□□□□□ -2.15
PRPF39Q86UA1 RNU6-99P-201ENST00000364721 107 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 MRPL35P1-201ENST00000404272 572 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 RNU4-62P-201ENST00000410125 130 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 AC010154.1-201ENST00000425857 269 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 AC245047.3-201ENST00000429428 127 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 PCNPP5-201ENST00000452246 481 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 RPS26P55-201ENST00000471178 356 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 AC010598.1-201ENST00000510378 103 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 RNU7-99P-201ENST00000516271 62 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 Y_RNA.676-201ENST00000516393 96 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.64□□□□□ -2.15
PRPF39Q86UA1 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.64□□□□□ -2.15
PRPF39Q86UA1 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.64□□□□□ -2.15
PRPF39Q86UA1 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.64□□□□□ -2.15
PRPF39Q86UA1 SNORD1A-201ENST00000364968 72 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 RN7SKP200-201ENST00000410564 320 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 RNU4-14P-201ENST00000410858 122 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 AL161935.2-201ENST00000414627 60 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 MRPS10P1-201ENST00000448483 130 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.63□□□□□ -2.15
PRPF39Q86UA1 RNU1-98P-201ENST00000458992 160 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.63□□□□□ -2.15
PRPF39Q86UA1 RNA5SP445-201ENST00000515889 115 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 AP003033.1-201ENST00000527244 415 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.63□□□□□ -2.15
PRPF39Q86UA1 MIR4303-201ENST00000581299 66 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 AL512598.1-201ENST00000610158 273 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 AC006435.5-201ENST00000624486 112 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 U6.108-201ENST00000637764 58 ntBASIC1.63□□□□□ -2.15
PRPF39Q86UA1 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
PRPF39Q86UA1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
PRPF39Q86UA1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.63□□□□□ -2.15
PRPF39Q86UA1 RNU6-1145P-201ENST00000384246 107 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 MIR625-201ENST00000385047 85 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 RNU11-5P-201ENST00000391216 129 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 MTCYBP4-201ENST00000401524 249 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 RNA5SP475-201ENST00000410568 110 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 RN7SKP101-201ENST00000411376 320 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 AC004965.1-201ENST00000413033 213 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 AL606517.2-201ENST00000442855 241 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 U8.22-201ENST00000459141 133 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 RNU6-625P-201ENST00000459412 107 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 RNU7-94P-201ENST00000459576 63 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 AC074133.1-201ENST00000515696 183 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 AC018448.1-201ENST00000552843 316 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 SUB1P3-201ENST00000564581 315 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 AC040896.1-201ENST00000613819 479 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 AL121890.5-201ENST00000620848 304 ntBASIC1.62□□□□□ -2.15
PRPF39Q86UA1 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.62□□□□□ -2.15
PRPF39Q86UA1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.62□□□□□ -2.15
PRPF39Q86UA1 WWP1P1-201ENST00000466609 2769 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 RNA5SP259-201ENST00000365541 109 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 RNU6-1065P-201ENST00000384513 106 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 MIR513A1-201ENST00000385138 129 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 MRPL42P3-201ENST00000401492 326 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 RNU6-1304P-201ENST00000411374 106 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 AP1B1P2-201ENST00000416196 106 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 AC245517.4-201ENST00000448601 281 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 AL163540.1-201ENST00000485382 386 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.61□□□□□ -2.15
PRPF39Q86UA1 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.61□□□□□ -2.15
PRPF39Q86UA1 RN7SKP49-201ENST00000516675 260 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.61□□□□□ -2.15
PRPF39Q86UA1 MIR3684-201ENST00000579779 74 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 AC022217.4-201ENST00000604389 163 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 AL357075.2-201ENST00000614906 189 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 AC099654.14-201ENST00000638599 341 ntBASIC1.61□□□□□ -2.15
PRPF39Q86UA1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
PRPF39Q86UA1 Y_RNA.4-201ENST00000362333 112 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 Y_RNA.164-201ENST00000363709 102 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 RNU6-407P-201ENST00000365280 104 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 SNORA69.1-201ENST00000390904 137 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 Y_RNA.646-201ENST00000410980 101 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 ELOCP21-201ENST00000412558 336 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.6□□□□□ -2.15
PRPF39Q86UA1 RPS27P1-201ENST00000450552 247 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 RPL30P15-201ENST00000457129 321 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 AC022493.2-201ENST00000506122 481 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 RNU6-559P-201ENST00000516151 98 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 MIR2355-201ENST00000517199 87 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 DNAJC19P9-201ENST00000555084 351 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 RPL21P9-201ENST00000556149 474 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 AC073413.2-201ENST00000604332 360 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 AC133104.2-201ENST00000615272 193 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
PRPF39Q86UA1 MIR8054-201ENST00000620877 86 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.6□□□□□ -2.15
PRPF39Q86UA1 RNU6-1188P-201ENST00000363795 107 ntBASIC1.59□□□□□ -2.15
PRPF39Q86UA1 RNU6-310P-201ENST00000384655 107 ntBASIC1.59□□□□□ -2.15
PRPF39Q86UA1 RNU6-1031P-201ENST00000384773 107 ntBASIC1.59□□□□□ -2.15
PRPF39Q86UA1 RNU6-440P-201ENST00000390882 105 ntBASIC1.59□□□□□ -2.15
PRPF39Q86UA1 SNORA67.6-201ENST00000391093 99 ntBASIC1.59□□□□□ -2.15
PRPF39Q86UA1 SNORA75.6-201ENST00000391318 127 ntBASIC1.59□□□□□ -2.15
PRPF39Q86UA1 SNORD12B-201ENST00000410433 91 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms