Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC008873.1-201ENST00000625051 138 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AC134503.1-201ENST00000633048 54 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 U6.92-201ENST00000636464 89 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 MIR219B-201ENST00000637023 88 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 RNU6-862P-201ENST00000362804 105 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 U3.8-201ENST00000363675 217 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.424-201ENST00000384063 103 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 RNU6-417P-201ENST00000384712 107 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 RNA5SP475-201ENST00000410568 110 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 AL357134.1-201ENST00000445848 426 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 AC025033.1-201ENST00000463883 194 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 HMGB3P17-201ENST00000504195 649 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 RNU6-988P-201ENST00000519081 107 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 AC023442.1-201ENST00000531247 422 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 MIR5094-201ENST00000578766 85 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 AC044792.1-201ENST00000593294 196 ntBASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.76□□□□□ -2.13
PDLIM3Q53GG5 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.28-201ENST00000362554 111 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 SNORD114-26-201ENST00000363543 72 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNU1-115P-201ENST00000365329 160 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNU6-42P-201ENST00000384165 107 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNU6-1235P-201ENST00000384559 107 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 SNORD78.2-201ENST00000391076 69 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 MIR1185-2-201ENST00000408687 86 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNU2-20P-201ENST00000410425 191 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNA5SP501-201ENST00000410990 112 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 MTCO3P19-201ENST00000415864 321 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 BTF3P4-201ENST00000418852 495 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RAB28P5-201ENST00000427490 651 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 ATP5J2P3-201ENST00000451550 258 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNU6-498P-201ENST00000459468 107 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AC067942.3-201ENST00000512025 362 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AC011406.1-201ENST00000512440 370 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 SNORA25.10-201ENST00000515926 124 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNVU1-2-201ENST00000516326 135 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 RNU6-856P-201ENST00000516959 98 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AC087441.2-201ENST00000529141 262 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AC020661.2-201ENST00000560114 134 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AC040896.1-201ENST00000613819 479 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 MIR6779-201ENST00000617283 64 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AP000553.5-201ENST00000641933 54 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 AC005592.1-201ENST00000566527 1640 ntBASIC1.75□□□□□ -2.13
PDLIM3Q53GG5 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 SNORA72.2-201ENST00000365028 127 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 SNORD14.1-201ENST00000365609 90 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.389-201ENST00000383924 113 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 RNY3P4-201ENST00000384428 101 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 MIR583-201ENST00000384846 75 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 SNORA17.3-201ENST00000391159 129 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 FCF1P4-201ENST00000448326 183 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 RNU6-717P-201ENST00000459076 104 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 RNU6-397P-201ENST00000516226 104 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 AC040926.1-201ENST00000530195 238 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 AP002001.1-203ENST00000534002 267 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 MIR4713-201ENST00000582691 75 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 AC016925.2-201ENST00000605108 242 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 AC240442.1-201ENST00000616055 283 ntBASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.74□□□□□ -2.13
PDLIM3Q53GG5 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.27-201ENST00000362540 103 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 RNU6-1266P-201ENST00000362794 105 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 RNU1-96P-201ENST00000364163 162 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.374-201ENST00000365606 101 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 SNORA67.3-201ENST00000384366 140 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AL078595.1-201ENST00000404458 226 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AC016909.1-201ENST00000415916 166 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AL021397.1-201ENST00000451806 248 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 RNU1-131P-201ENST00000458943 161 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 RNU6-221P-201ENST00000459541 99 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 SCARNA16.3-201ENST00000516595 184 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 RNA5SP364-201ENST00000516938 78 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AC025647.1-201ENST00000517879 253 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AC055872.1-201ENST00000570978 278 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 AC124312.5-201ENST00000604451 268 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms