| ZNF543 | Q08ER8 | Y_RNA.720-201 | ENST00000517166 | 92 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AC131281.1-201 | ENST00000522984 | 164 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AP002001.1-203 | ENST00000534002 | 267 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AC113192.4-201 | ENST00000534666 | 547 nt | TSL 4 BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | MIR4423-201 | ENST00000580922 | 80 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | RAC1P9-201 | ENST00000604990 | 392 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AC011373.1-201 | ENST00000607270 | 237 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | MIR6715A-201 | ENST00000615929 | 79 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | 5S_rRNA.11-201 | ENST00000618635 | 84 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | OXR1-209 | ENST00000517566 | 4501 nt | TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | KTN1-207 | ENST00000438792 | 4449 nt | APPRIS ALT2 TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | SENP7-206 | ENST00000394094 | 4703 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AC005336.3-201 | ENST00000623833 | 2679 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | Y_RNA.162-201 | ENST00000363683 | 102 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | RNU6-1175P-201 | ENST00000365200 | 107 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | Y_RNA.570-201 | ENST00000384750 | 101 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | MIR515-2-201 | ENST00000384883 | 83 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | MIR515-1-201 | ENST00000384884 | 83 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | MIR597-201 | ENST00000384968 | 97 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | RNU2-54P-201 | ENST00000410299 | 190 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | RNU6-130P-201 | ENST00000411112 | 103 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | HMGN2P34-201 | ENST00000437647 | 269 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AC055731.1-201 | ENST00000474387 | 401 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | RNU6-897P-201 | ENST00000517135 | 105 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AL137100.2-201 | ENST00000555786 | 315 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | AC022441.3-201 | ENST00000605737 | 136 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| ZNF543 | Q08ER8 | TAB2-205 | ENST00000538427 | 4240 nt | APPRIS P1 TSL 5 BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-271P-201 | ENST00000363858 | 105 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | Y_RNA.210-201 | ENST00000364161 | 110 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-454P-201 | ENST00000364292 | 107 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORA63C-201 | ENST00000364578 | 129 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-738P-201 | ENST00000384531 | 106 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC016909.1-201 | ENST00000415916 | 166 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC113618.1-201 | ENST00000416747 | 285 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | IKZF2-209 | ENST00000442445 | 551 nt | TSL 5 BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SCARNA15.1-201 | ENST00000516384 | 125 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU7-110P-201 | ENST00000516891 | 62 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU2-12P-201 | ENST00000517216 | 168 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | U6.115-201 | ENST00000636045 | 103 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC099654.10-201 | ENST00000640395 | 161 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | Y_RNA.153-201 | ENST00000363615 | 91 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-770P-201 | ENST00000363929 | 105 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | Y_RNA.243-201 | ENST00000364481 | 109 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | Y_RNA.446-201 | ENST00000384178 | 104 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-937P-201 | ENST00000384325 | 106 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-21P-201 | ENST00000384710 | 107 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6ATAC38P-201 | ENST00000408119 | 126 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNA5SP450-201 | ENST00000411206 | 102 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | CST2P1-201 | ENST00000425770 | 87 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC003988.1-201 | ENST00000447198 | 578 nt | TSL 5 BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC005042.3-201 | ENST00000453230 | 174 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORD65B-201 | ENST00000459126 | 73 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MRPS35P2-201 | ENST00000508242 | 191 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC055872.1-201 | ENST00000570978 | 278 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MIR5089-201 | ENST00000580047 | 84 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC104984.5-201 | ENST00000586878 | 94 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AL049779.4-201 | ENST00000604500 | 156 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AL360085.1-201 | ENST00000604713 | 532 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MIR376A1-201 | ENST00000616574 | 68 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MIR338-201 | ENST00000636369 | 67 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SAGE1-201 | ENST00000324447 | 2952 nt | APPRIS P2 TSL 5 BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | OR2L2-202 | ENST00000641771 | 4300 nt | APPRIS P1 BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | Y_RNA.101-201 | ENST00000363154 | 102 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU1-96P-201 | ENST00000364163 | 162 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AL592431.2-201 | ENST00000422198 | 171 nt | TSL 3 BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC010154.1-201 | ENST00000425857 | 269 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC116666.1-201 | ENST00000453915 | 551 nt | TSL 5 BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AL354733.1-201 | ENST00000458016 | 476 nt | TSL 3 BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MTND5P22-201 | ENST00000458380 | 195 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC010655.3-201 | ENST00000478818 | 450 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SEPT14P8-201 | ENST00000508026 | 178 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-327P-201 | ENST00000516270 | 127 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNY3P15-201 | ENST00000516297 | 97 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-155P-201 | ENST00000516347 | 100 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-1046P-201 | ENST00000516538 | 107 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORA31.15-201 | ENST00000516771 | 132 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MDM2-232 | ENST00000544561 | 213 nt | TSL 5 BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNHG14-219 | ENST00000553134 | 470 nt | TSL 2 BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC008737.2-201 | ENST00000599446 | 118 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORD113-5-201 | ENST00000607261 | 78 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | XRCC4-205 | ENST00000511817 | 1636 nt | APPRIS P4 TSL 1 (best) BASIC | 2.31 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | FAR1-204 | ENST00000532502 | 5820 nt | TSL 2 BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORD114-7-201 | ENST00000362520 | 77 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-862P-201 | ENST00000362804 | 105 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | Y_RNA.331-201 | ENST00000365267 | 102 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORA20B-201 | ENST00000384220 | 132 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNU6-417P-201 | ENST00000384712 | 107 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MIR504-201 | ENST00000385065 | 83 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORA48.1-201 | ENST00000390879 | 135 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | SNORA70.12-201 | ENST00000516084 | 153 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC100807.1-201 | ENST00000517640 | 552 nt | TSL 5 BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC005828.6-201 | ENST00000606610 | 232 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | PTPN22-203 | ENST00000460620 | 1794 nt | TSL 1 (best) BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | CENPCP1-201 | ENST00000533085 | 2578 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | AC008555.8-201 | ENST00000623602 | 2168 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MGAT4C-207 | ENST00000552808 | 1937 nt | APPRIS P1 TSL 2 BASIC | 2.29 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | Y_RNA.214-201 | ENST00000364201 | 112 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | RNA5SP160-201 | ENST00000364866 | 120 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | U8.13-201 | ENST00000390842 | 128 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| ZNF543 | Q08ER8 | MIR873-201 | ENST00000401120 | 77 nt | BASIC | 2.29 | □□□□□ -2.04 | | |