Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC112693.2-201ENST00000556538 232 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 MIR4307-201ENST00000582802 84 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC008521.1-201ENST00000587471 187 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC023158.2-201ENST00000614876 543 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 uc_338.16-201ENST00000621804 95 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AL157770.1-201ENST00000623049 439 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC022418.1-201ENST00000624118 445 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC120349.2-201ENST00000625002 298 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC103706.2-201ENST00000638080 240 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC013437.2-201ENST00000639587 677 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 AL163152.1-201ENST00000642001 374 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU6-534P-201ENST00000364877 106 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU6-364P-201ENST00000384387 107 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 MIR593-201ENST00000384856 100 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNA5SP496-201ENST00000391240 109 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 MIR1827-201ENST00000408549 66 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU6-735P-201ENST00000410612 107 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU2-62P-201ENST00000410868 191 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC114491.1-201ENST00000416095 246 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 CALM2P4-201ENST00000430810 426 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RPL17P35-201ENST00000432217 549 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC073910.1-201ENST00000445047 438 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC074290.1-201ENST00000448883 135 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 MTND1P9-201ENST00000453775 944 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 USP9YP25-201ENST00000457708 443 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 MTCO2P6-201ENST00000463134 685 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC097462.1-201ENST00000514125 324 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU1-86P-201ENST00000516108 154 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU1-107P-201ENST00000516617 154 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 SNORA31.14-201ENST00000516728 116 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU6-677P-201ENST00000516914 101 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 MIR378D2-201ENST00000580636 98 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 BCRP9-201ENST00000605312 388 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 RNU6-88P-201ENST00000606801 100 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC068792.1-201ENST00000621354 417 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 AC131159.1-201ENST00000621854 213 ntBASIC-0.07□□□□□ -2.42
COL7A1Q02388 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-0.07□□□□□ -2.42
COL7A1Q02388 MIRLET7C-201ENST00000362160 84 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU6-1084P-201ENST00000362498 107 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 SNORA80D-201ENST00000384488 135 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 Y_RNA.505-201ENST00000384489 102 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU6-205P-201ENST00000390858 107 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 SNORA75.1-201ENST00000391130 148 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR1185-2-201ENST00000408687 86 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL663109.1-201ENST00000411498 844 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL390729.2-201ENST00000416137 156 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL590632.1-201ENST00000424289 371 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 DEFB130D-201ENST00000426866 237 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 RPL23AP30-201ENST00000432419 501 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 MTND1P32-201ENST00000433043 938 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC005042.3-201ENST00000453230 174 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 SNORD4A-201ENST00000459174 72 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC018710.1-201ENST00000506509 158 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 SNORA70.12-201ENST00000516084 153 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR3118-1-201ENST00000581787 76 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 FGF7P1-201ENST00000582820 288 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR4753-201ENST00000585119 83 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC005776.1-201ENST00000603164 290 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL353765.1-201ENST00000605514 183 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC002044.1-201ENST00000606707 158 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC245297.2-201ENST00000610119 565 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC091912.2-201ENST00000624798 167 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 SNORA1.1-201ENST00000364671 133 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU6-946P-201ENST00000383878 107 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU6-269P-201ENST00000391077 97 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL139396.1-201ENST00000421137 167 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 BX276092.1-201ENST00000427368 251 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC245047.3-201ENST00000429428 127 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 USP9YP16-201ENST00000430287 407 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL358934.1-201ENST00000432346 324 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC002429.1-201ENST00000437672 148 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 AL031274.1-201ENST00000450334 232 ntBASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms