Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC097462.1-201ENST00000514125 324 ntBASIC3.05□□□□□ -1.92
RNF4P78317 MIR2276-201ENST00000516886 89 ntBASIC3.05□□□□□ -1.92
RNF4P78317 RNU7-172P-201ENST00000517125 64 ntBASIC3.05□□□□□ -1.92
RNF4P78317 AL049861.1-201ENST00000603130 150 ntBASIC3.05□□□□□ -1.92
RNF4P78317 uc_338.1-201ENST00000612113 180 ntBASIC3.05□□□□□ -1.92
RNF4P78317 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
RNF4P78317 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.05□□□□□ -1.92
RNF4P78317 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.04□□□□□ -1.92
RNF4P78317 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
RNF4P78317 RNY1P11-201ENST00000363759 113 ntBASIC3.04□□□□□ -1.92
RNF4P78317 RNY3P5-201ENST00000384127 102 ntBASIC3.04□□□□□ -1.92
RNF4P78317 Y_RNA.542-201ENST00000384641 111 ntBASIC3.04□□□□□ -1.92
RNF4P78317 MIR95-201ENST00000385072 81 ntBASIC3.04□□□□□ -1.92
RNF4P78317 RN7SKP101-201ENST00000411376 320 ntBASIC3.04□□□□□ -1.92
RNF4P78317 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.04□□□□□ -1.92
RNF4P78317 AL357134.1-201ENST00000445848 426 ntBASIC3.04□□□□□ -1.92
RNF4P78317 RPS4XP11-201ENST00000446897 772 ntBASIC3.04□□□□□ -1.92
RNF4P78317 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.04□□□□□ -1.92
RNF4P78317 RPS27P1-201ENST00000450552 247 ntBASIC3.04□□□□□ -1.92
RNF4P78317 RN7SL442P-201ENST00000473804 320 ntBASIC3.04□□□□□ -1.92
RNF4P78317 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC3.04□□□□□ -1.92
RNF4P78317 SNORA48.11-201ENST00000517015 89 ntBASIC3.04□□□□□ -1.92
RNF4P78317 NDUFB9P3-201ENST00000521269 501 ntBASIC3.04□□□□□ -1.92
RNF4P78317 AL355297.2-201ENST00000604792 129 ntBASIC3.04□□□□□ -1.92
RNF4P78317 MIR6844-201ENST00000637122 62 ntBASIC3.04□□□□□ -1.92
RNF4P78317 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
RNF4P78317 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
RNF4P78317 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
RNF4P78317 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
RNF4P78317 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.04□□□□□ -1.92
RNF4P78317 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.04□□□□□ -1.92
RNF4P78317 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.04□□□□□ -1.92
RNF4P78317 AC009487.4-201ENST00000624969 3585 ntBASIC3.04□□□□□ -1.92
RNF4P78317 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.03□□□□□ -1.92
RNF4P78317 MIR340-201ENST00000362125 95 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNU6-674P-201ENST00000363831 107 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNA5SP387-201ENST00000364226 106 ntBASIC3.03□□□□□ -1.92
RNF4P78317 Y_RNA.261-201ENST00000364631 102 ntBASIC3.03□□□□□ -1.92
RNF4P78317 Y_RNA.393-201ENST00000383936 102 ntBASIC3.03□□□□□ -1.92
RNF4P78317 SNORA72-201ENST00000384339 132 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNU6-220P-201ENST00000390919 107 ntBASIC3.03□□□□□ -1.92
RNF4P78317 MIR887-201ENST00000401258 79 ntBASIC3.03□□□□□ -1.92
RNF4P78317 MIR1253-201ENST00000408273 105 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNU6-588P-201ENST00000410281 105 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNU4-43P-201ENST00000410628 137 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNU2-63P-201ENST00000410792 194 ntBASIC3.03□□□□□ -1.92
RNF4P78317 AC123900.1-201ENST00000420390 96 ntBASIC3.03□□□□□ -1.92
RNF4P78317 AC010154.1-201ENST00000425857 269 ntBASIC3.03□□□□□ -1.92
RNF4P78317 AC006028.1-201ENST00000438379 402 ntBASIC3.03□□□□□ -1.92
RNF4P78317 SNRPGP8-201ENST00000454064 226 ntBASIC3.03□□□□□ -1.92
RNF4P78317 BX510359.1-201ENST00000456973 237 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNU7-197P-201ENST00000458836 62 ntBASIC3.03□□□□□ -1.92
RNF4P78317 RNU6-1211P-201ENST00000459179 105 ntBASIC3.03□□□□□ -1.92
RNF4P78317 AC092991.1-201ENST00000477176 376 ntBASIC3.03□□□□□ -1.92
RNF4P78317 AC093259.1-201ENST00000509755 300 ntBASIC3.03□□□□□ -1.92
RNF4P78317 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.03□□□□□ -1.92
RNF4P78317 RNU6-56P-201ENST00000516986 93 ntBASIC3.03□□□□□ -1.92
RNF4P78317 AC007536.1-201ENST00000533382 349 ntBASIC3.03□□□□□ -1.92
RNF4P78317 MIR5680-201ENST00000577577 84 ntBASIC3.03□□□□□ -1.92
RNF4P78317 MIR7112-201ENST00000616126 65 ntBASIC3.03□□□□□ -1.92
RNF4P78317 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.03□□□□□ -1.92
RNF4P78317 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.03□□□□□ -1.92
RNF4P78317 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.03□□□□□ -1.92
RNF4P78317 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.03□□□□□ -1.93
RNF4P78317 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
RNF4P78317 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
RNF4P78317 AC073346.2-201ENST00000624724 2058 ntBASIC3.02□□□□□ -1.93
RNF4P78317 AC138915.1-201ENST00000565427 1685 ntBASIC3.02□□□□□ -1.93
RNF4P78317 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.02□□□□□ -1.93
RNF4P78317 Y_RNA.218-201ENST00000364218 104 ntBASIC3.02□□□□□ -1.93
RNF4P78317 Y_RNA.332-201ENST00000365271 113 ntBASIC3.02□□□□□ -1.93
RNF4P78317 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
RNF4P78317 AL512604.1-201ENST00000404812 257 ntBASIC3.02□□□□□ -1.93
RNF4P78317 RNU2-48P-201ENST00000410694 191 ntBASIC3.02□□□□□ -1.93
RNF4P78317 AC244505.4-201ENST00000434905 287 ntBASIC3.02□□□□□ -1.93
RNF4P78317 HMGN2P34-201ENST00000437647 269 ntBASIC3.02□□□□□ -1.93
RNF4P78317 SSXP5-201ENST00000443473 287 ntBASIC3.02□□□□□ -1.93
RNF4P78317 SNORA4.4-201ENST00000515921 135 ntBASIC3.02□□□□□ -1.93
RNF4P78317 RNU6-856P-201ENST00000516959 98 ntBASIC3.02□□□□□ -1.93
RNF4P78317 AL356280.1-201ENST00000603614 379 ntBASIC3.02□□□□□ -1.93
RNF4P78317 AL021707.8-201ENST00000609428 183 ntBASIC3.02□□□□□ -1.93
RNF4P78317 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.02□□□□□ -1.93
RNF4P78317 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
RNF4P78317 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.02□□□□□ -1.93
RNF4P78317 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
RNF4P78317 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
RNF4P78317 SNORA38.1-201ENST00000364172 131 ntBASIC3.01□□□□□ -1.93
RNF4P78317 Y_RNA.333-201ENST00000365274 102 ntBASIC3.01□□□□□ -1.93
RNF4P78317 RNU6-1336P-201ENST00000383886 109 ntBASIC3.01□□□□□ -1.93
RNF4P78317 MIR592-201ENST00000384959 97 ntBASIC3.01□□□□□ -1.93
RNF4P78317 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
RNF4P78317 RNA5SP496-201ENST00000391240 109 ntBASIC3.01□□□□□ -1.93
RNF4P78317 SNORA26.7-201ENST00000391288 122 ntBASIC3.01□□□□□ -1.93
RNF4P78317 SNORA79-201ENST00000408376 140 ntBASIC3.01□□□□□ -1.93
RNF4P78317 CST9LP2-201ENST00000437612 320 ntBASIC3.01□□□□□ -1.93
RNF4P78317 AP001486.1-201ENST00000463339 476 ntBASIC3.01□□□□□ -1.93
RNF4P78317 RNU6-1234P-201ENST00000516877 103 ntBASIC3.01□□□□□ -1.93
RNF4P78317 RNU6-667P-201ENST00000517186 102 ntBASIC3.01□□□□□ -1.93
RNF4P78317 AC068657.1-201ENST00000520807 306 ntBASIC3.01□□□□□ -1.93
RNF4P78317 RPL23AP91-201ENST00000569211 455 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms