Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Z82188.1-201ENST00000436709 154 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 AC243964.1-201ENST00000441814 261 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 Y_RNA.650-201ENST00000459002 102 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 RPS29P1-201ENST00000465274 159 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 COX6CP14-201ENST00000469580 174 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.6□□□□□ -2.15
COL4A4P53420 RNU6-1278P-201ENST00000516130 107 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 SNORA31.8-201ENST00000516327 108 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 Y_RNA.777-201ENST00000516982 102 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 SNORA31.18-201ENST00000517043 134 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 MIR3921-201ENST00000577308 85 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 MIR4782-201ENST00000577987 79 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 MIR4659A-201ENST00000580269 81 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 MIR4282-201ENST00000583613 67 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 Y_RNA.771-201ENST00000598668 102 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 AC004832.4-201ENST00000608952 331 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.6□□□□□ -2.15
COL4A4P53420 AL360181.4-201ENST00000621752 134 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 Y_RNA.789-201ENST00000622480 102 ntBASIC1.6□□□□□ -2.15
COL4A4P53420 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
COL4A4P53420 HAUS6P2-201ENST00000433254 2404 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.59□□□□□ -2.15
COL4A4P53420 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
COL4A4P53420 UBE2WP1-201ENST00000362030 340 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 RNU6-50P-201ENST00000362356 103 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 Y_RNA.33-201ENST00000362591 102 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 RNU6-1074P-201ENST00000383995 104 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 RNU6-281P-201ENST00000384212 103 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 RNU6-1145P-201ENST00000384246 107 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 MIR517C-201ENST00000385103 95 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 AL354695.1-201ENST00000427935 228 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 EIF1P2-201ENST00000428233 350 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 AC009296.1-201ENST00000443146 155 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 SSXP4-201ENST00000451349 245 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.59□□□□□ -2.15
COL4A4P53420 HMGN2P16-201ENST00000456802 261 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 snoU109.2-201ENST00000459316 135 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.59□□□□□ -2.15
COL4A4P53420 RPL30P10-201ENST00000488148 337 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 RNU6-496P-201ENST00000516145 99 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 SNORA27.4-201ENST00000516650 95 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 RNA5SP290-201ENST00000517133 127 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 AC022559.1-201ENST00000520905 205 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 AC008121.1-201ENST00000603244 268 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 AL161629.2-201ENST00000615347 275 ntBASIC1.59□□□□□ -2.15
COL4A4P53420 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.15
COL4A4P53420 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
COL4A4P53420 SDAD1P2-201ENST00000441308 2028 ntBASIC1.59□□□□□ -2.16
COL4A4P53420 RNU6-137P-201ENST00000363680 108 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 SNORD14B-201ENST00000364533 90 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-326P-201ENST00000365480 107 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 Y_RNA.433-201ENST00000384089 102 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-959P-201ENST00000384671 107 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 MIR32-201ENST00000384965 70 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 MIR514A1-201ENST00000385133 98 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 MIR320A-201ENST00000385302 82 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
COL4A4P53420 SNORA67.6-201ENST00000391093 99 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AK3P2-201ENST00000507976 429 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNY3P16-201ENST00000516338 101 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-1198P-201ENST00000516904 67 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-612P-201ENST00000516909 102 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.58□□□□□ -2.16
COL4A4P53420 MED28P6-201ENST00000558776 231 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.58□□□□□ -2.16
COL4A4P53420 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.58□□□□□ -2.16
COL4A4P53420 MIR3144-201ENST00000579460 79 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC008749.1-201ENST00000597650 306 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 MIR6788-201ENST00000618842 66 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 U6.106-201ENST00000636360 105 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.58□□□□□ -2.16
COL4A4P53420 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.58□□□□□ -2.16
COL4A4P53420 U8.1-201ENST00000362843 134 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-527P-201ENST00000363425 104 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 Y_RNA.251-201ENST00000364551 99 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 Y_RNA.393-201ENST00000383936 102 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-318P-201ENST00000384283 103 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-22P-201ENST00000384355 107 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 SNORD78.2-201ENST00000391076 69 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU2-40P-201ENST00000410833 196 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AL356867.1-201ENST00000429623 299 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 NDUFB4P10-201ENST00000452541 359 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 FABP5P15-201ENST00000453566 214 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-1256P-201ENST00000516539 103 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 RNU6-1282P-201ENST00000516735 96 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC093023.1-201ENST00000547375 507 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC023824.2-201ENST00000566185 400 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AL161798.1-201ENST00000604630 131 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC072026.1-201ENST00000605023 201 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC097372.5-201ENST00000623665 376 ntBASIC1.58□□□□□ -2.16
COL4A4P53420 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.58□□□□□ -2.16
COL4A4P53420 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL4A4P53420 AC009541.1-201ENST00000438279 2662 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AC135776.4-201ENST00000624300 1904 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 BX322639.1-202ENST00000423987 2213 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
COL4A4P53420 RNU6-1266P-201ENST00000362794 105 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 153.7 ms