Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 U2.5-201ENST00000619465 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 U2.10-201ENST00000620268 191 ntBASIC2.37□□□□□ -2.03
CIITAP33076 AC127459.3-201ENST00000624328 466 ntBASIC2.37□□□□□ -2.03
CIITAP33076 AC008873.1-201ENST00000625051 138 ntBASIC2.37□□□□□ -2.03
CIITAP33076 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CIITAP33076 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.37□□□□□ -2.03
CIITAP33076 AC010615.1-201ENST00000594254 1764 ntBASIC2.36□□□□□ -2.03
CIITAP33076 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
CIITAP33076 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CIITAP33076 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.36□□□□□ -2.03
CIITAP33076 MIR410-201ENST00000362222 80 ntBASIC2.36□□□□□ -2.03
CIITAP33076 MIRLET7G-201ENST00000362280 84 ntBASIC2.36□□□□□ -2.03
CIITAP33076 SNORD81.1-201ENST00000363064 77 ntBASIC2.36□□□□□ -2.03
CIITAP33076 RNU6-454P-201ENST00000364292 107 ntBASIC2.36□□□□□ -2.03
CIITAP33076 RNU6-234P-201ENST00000365229 104 ntBASIC2.36□□□□□ -2.03
CIITAP33076 Y_RNA.401-201ENST00000383965 117 ntBASIC2.36□□□□□ -2.03
CIITAP33076 MIR1302-6-201ENST00000408466 90 ntBASIC2.36□□□□□ -2.03
CIITAP33076 MIR1294-201ENST00000408503 142 ntBASIC2.36□□□□□ -2.03
CIITAP33076 RNU4-30P-201ENST00000410245 143 ntBASIC2.36□□□□□ -2.03
CIITAP33076 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.36□□□□□ -2.03
CIITAP33076 TRBVB-201ENST00000477100 408 ntBASIC2.36□□□□□ -2.03
CIITAP33076 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.36□□□□□ -2.03
CIITAP33076 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.36□□□□□ -2.03
CIITAP33076 RNU6-965P-201ENST00000516721 96 ntBASIC2.36□□□□□ -2.03
CIITAP33076 MIR3671-201ENST00000580455 88 ntBASIC2.36□□□□□ -2.03
CIITAP33076 AC006006.1-201ENST00000603082 144 ntBASIC2.36□□□□□ -2.03
CIITAP33076 RPL17P51-201ENST00000605218 238 ntBASIC2.36□□□□□ -2.03
CIITAP33076 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CIITAP33076 RNU6-545P-201ENST00000362681 104 ntBASIC2.35□□□□□ -2.03
CIITAP33076 Y_RNA.230-201ENST00000364348 109 ntBASIC2.35□□□□□ -2.03
CIITAP33076 Y_RNA.307-201ENST00000365022 117 ntBASIC2.35□□□□□ -2.03
CIITAP33076 Y_RNA.498-201ENST00000384460 102 ntBASIC2.35□□□□□ -2.03
CIITAP33076 Y_RNA.562-201ENST00000384695 113 ntBASIC2.35□□□□□ -2.03
CIITAP33076 MIR548B-201ENST00000385247 97 ntBASIC2.35□□□□□ -2.03
CIITAP33076 MT-TG-201ENST00000387429 68 ntBASIC2.35□□□□□ -2.03
CIITAP33076 Y_RNA.602-201ENST00000410535 92 ntBASIC2.35□□□□□ -2.03
CIITAP33076 RNU2-38P-201ENST00000410856 79 ntBASIC2.35□□□□□ -2.03
CIITAP33076 RPS23P5-201ENST00000495419 428 ntBASIC2.35□□□□□ -2.03
CIITAP33076 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.35□□□□□ -2.03
CIITAP33076 RNU1-117P-201ENST00000517041 158 ntBASIC2.35□□□□□ -2.03
CIITAP33076 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CIITAP33076 AC121758.2-201ENST00000553271 193 ntBASIC2.35□□□□□ -2.03
CIITAP33076 AL109918.3-201ENST00000603072 338 ntBASIC2.35□□□□□ -2.03
CIITAP33076 AC022441.3-201ENST00000605737 136 ntBASIC2.35□□□□□ -2.03
CIITAP33076 AC091932.3-201ENST00000624223 323 ntBASIC2.35□□□□□ -2.03
CIITAP33076 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.35□□□□□ -2.03
CIITAP33076 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
CIITAP33076 SNORA3A-201ENST00000364113 130 ntBASIC2.34□□□□□ -2.03
CIITAP33076 Y_RNA.288-201ENST00000364854 92 ntBASIC2.34□□□□□ -2.03
CIITAP33076 RNU6-1175P-201ENST00000365200 107 ntBASIC2.34□□□□□ -2.03
CIITAP33076 SNORA6-201ENST00000384033 151 ntBASIC2.34□□□□□ -2.03
CIITAP33076 Y_RNA.446-201ENST00000384178 104 ntBASIC2.34□□□□□ -2.03
CIITAP33076 RNU5A-5P-201ENST00000411054 116 ntBASIC2.34□□□□□ -2.03
CIITAP33076 RNU2-32P-201ENST00000411193 191 ntBASIC2.34□□□□□ -2.03
CIITAP33076 AL139156.1-201ENST00000412785 841 ntBASIC2.34□□□□□ -2.03
CIITAP33076 EDDM3CP-201ENST00000415977 425 ntBASIC2.34□□□□□ -2.03
CIITAP33076 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.34□□□□□ -2.03
CIITAP33076 AC139712.2-201ENST00000424302 339 ntBASIC2.34□□□□□ -2.03
CIITAP33076 RPL23AP3-201ENST00000453844 468 ntBASIC2.34□□□□□ -2.03
CIITAP33076 RNU6-1132P-201ENST00000459214 107 ntBASIC2.34□□□□□ -2.03
CIITAP33076 RNU7-14P-201ENST00000459331 62 ntBASIC2.34□□□□□ -2.03
CIITAP33076 Y_RNA.638-201ENST00000459374 113 ntBASIC2.34□□□□□ -2.03
CIITAP33076 RNU5F-4P-201ENST00000516581 114 ntBASIC2.34□□□□□ -2.03
CIITAP33076 AC022616.8-201ENST00000533569 253 ntBASIC2.34□□□□□ -2.03
CIITAP33076 NDUFA5P6-201ENST00000542110 379 ntBASIC2.34□□□□□ -2.03
CIITAP33076 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.34□□□□□ -2.03
CIITAP33076 MIR4769-201ENST00000584126 77 ntBASIC2.34□□□□□ -2.03
CIITAP33076 AC012433.1-201ENST00000588916 398 ntBASIC2.34□□□□□ -2.03
CIITAP33076 AC005176.2-201ENST00000596933 147 ntBASIC2.34□□□□□ -2.03
CIITAP33076 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.34□□□□□ -2.03
CIITAP33076 AC004467.1-201ENST00000615678 330 ntBASIC2.34□□□□□ -2.03
CIITAP33076 AC009487.4-201ENST00000624969 3585 ntBASIC2.34□□□□□ -2.04
CIITAP33076 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.34□□□□□ -2.04
CIITAP33076 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CIITAP33076 AL596028.1-201ENST00000326971 197 ntBASIC2.33□□□□□ -2.04
CIITAP33076 Y_RNA.14-201ENST00000362415 103 ntBASIC2.33□□□□□ -2.04
CIITAP33076 Y_RNA.237-201ENST00000364439 102 ntBASIC2.33□□□□□ -2.04
CIITAP33076 RNU6-546P-201ENST00000383991 107 ntBASIC2.33□□□□□ -2.04
CIITAP33076 MIR586-201ENST00000385035 97 ntBASIC2.33□□□□□ -2.04
CIITAP33076 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CIITAP33076 AC245102.2-201ENST00000448956 180 ntBASIC2.33□□□□□ -2.04
CIITAP33076 HMGN2P9-201ENST00000476875 229 ntBASIC2.33□□□□□ -2.04
CIITAP33076 HMGB3P17-201ENST00000504195 649 ntBASIC2.33□□□□□ -2.04
CIITAP33076 RNU6-1338P-201ENST00000516328 91 ntBASIC2.33□□□□□ -2.04
CIITAP33076 AC110588.1-201ENST00000559699 137 ntBASIC2.33□□□□□ -2.04
CIITAP33076 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.33□□□□□ -2.04
CIITAP33076 MIR4529-201ENST00000578110 78 ntBASIC2.33□□□□□ -2.04
CIITAP33076 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.33□□□□□ -2.04
CIITAP33076 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.33□□□□□ -2.04
CIITAP33076 AC012640.5-201ENST00000623897 319 ntBASIC2.33□□□□□ -2.04
CIITAP33076 MIR3674-201ENST00000636576 68 ntBASIC2.33□□□□□ -2.04
CIITAP33076 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CIITAP33076 RNU6-1264P-201ENST00000383891 107 ntBASIC2.32□□□□□ -2.04
CIITAP33076 SNORD23.1-201ENST00000408212 104 ntBASIC2.32□□□□□ -2.04
CIITAP33076 NDUFB4P10-201ENST00000452541 359 ntBASIC2.32□□□□□ -2.04
CIITAP33076 RNU2-12P-201ENST00000517216 168 ntBASIC2.32□□□□□ -2.04
CIITAP33076 DEFB108E-201ENST00000524692 240 ntBASIC2.32□□□□□ -2.04
CIITAP33076 AC010900.2-201ENST00000604508 210 ntBASIC2.32□□□□□ -2.04
CIITAP33076 SNORD113-5-201ENST00000607261 78 ntBASIC2.32□□□□□ -2.04
CIITAP33076 AC011373.1-201ENST00000607270 237 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms