Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR3171-201ENST00000584270 74 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 AL356055.1-201ENST00000602528 446 ntBASIC2.04□□□□□ -2.08
HOXC9P31274 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.03□□□□□ -2.08
HOXC9P31274 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
HOXC9P31274 AL391987.6-201ENST00000305671 199 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 RNA5SP493-201ENST00000364115 91 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 SNORA16B-201ENST00000364674 135 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 RNU6-392P-201ENST00000364926 101 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 SNORA22B-201ENST00000383876 138 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 MTCO1P44-201ENST00000441935 243 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 AC009474.2-201ENST00000451383 136 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 PCNPP5-201ENST00000452246 481 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 AC055731.1-201ENST00000474387 401 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXC9P31274 RNU6-948P-201ENST00000516374 107 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 RNU6-911P-201ENST00000516523 104 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 RNA5SP364-201ENST00000516938 78 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 RNU2-19P-201ENST00000517288 84 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 RNU6-988P-201ENST00000519081 107 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 AL161670.1-201ENST00000554348 137 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 AC020661.2-201ENST00000560114 134 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 MIR4421-201ENST00000578133 69 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 AC011476.5-201ENST00000615594 130 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 AL138825.1-201ENST00000618587 192 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 AC006001.4-201ENST00000622243 395 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 U6.92-201ENST00000636464 89 ntBASIC2.03□□□□□ -2.08
HOXC9P31274 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.03□□□□□ -2.08
HOXC9P31274 AL159152.1-201ENST00000635019 2587 ntBASIC2.03□□□□□ -2.09
HOXC9P31274 AC005592.1-201ENST00000566527 1640 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 WWP1P1-201ENST00000466609 2769 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 RNU1-58P-201ENST00000362413 163 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 Y_RNA.28-201ENST00000362554 111 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 Y_RNA.327-201ENST00000365201 102 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 RNY3P4-201ENST00000384428 101 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 SNORD78.2-201ENST00000391076 69 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 MTCO3P19-201ENST00000415864 321 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXC9P31274 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXC9P31274 AL357134.1-201ENST00000445848 426 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 RNU6-625P-201ENST00000459412 107 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.02□□□□□ -2.09
HOXC9P31274 SNORA25.10-201ENST00000515926 124 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 Y_RNA.711-201ENST00000516993 102 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 SNORA31.24-201ENST00000517232 57 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HOXC9P31274 AC023442.1-201ENST00000531247 422 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 AC018448.1-201ENST00000552843 316 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXC9P31274 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXC9P31274 RPS29P30-201ENST00000600975 111 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.02□□□□□ -2.09
HOXC9P31274 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.02□□□□□ -2.09
HOXC9P31274 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
HOXC9P31274 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
HOXC9P31274 Y_RNA.27-201ENST00000362540 103 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 U3.8-201ENST00000363675 217 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 SNORA7.1-201ENST00000363750 139 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 Y_RNA.498-201ENST00000384460 102 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 RNU6-1235P-201ENST00000384559 107 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 MIR17-201ENST00000385012 84 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 SNORA40.19-201ENST00000390846 128 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 MIR1302-11-201ENST00000408051 138 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 MIR1302-9-201ENST00000408365 138 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 U3.40-201ENST00000408706 208 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 MIR1302-10-201ENST00000408734 138 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 ELOCP21-201ENST00000412558 336 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.01□□□□□ -2.09
HOXC9P31274 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.01□□□□□ -2.09
HOXC9P31274 RNU6-498P-201ENST00000459468 107 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 RPS27P21-201ENST00000486977 252 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 AC010469.2-201ENST00000496412 480 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 RNU6-408P-201ENST00000515910 100 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 AL109918.3-201ENST00000603072 338 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 MIR1302-2-201ENST00000607096 138 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 snoZ196.1-201ENST00000625269 89 ntBASIC2.01□□□□□ -2.09
HOXC9P31274 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXC9P31274 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.01□□□□□ -2.09
HOXC9P31274 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.01□□□□□ -2.09
HOXC9P31274 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
HOXC9P31274 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2□□□□□ -2.09
HOXC9P31274 RNU4-76P-201ENST00000364509 141 ntBASIC2□□□□□ -2.09
HOXC9P31274 RNU6-450P-201ENST00000364654 107 ntBASIC2□□□□□ -2.09
HOXC9P31274 Y_RNA.424-201ENST00000384063 103 ntBASIC2□□□□□ -2.09
HOXC9P31274 MIR499A-201ENST00000384903 122 ntBASIC2□□□□□ -2.09
HOXC9P31274 AC005534.2-201ENST00000431047 433 ntBASIC2□□□□□ -2.09
HOXC9P31274 FCF1P4-201ENST00000448326 183 ntBASIC2□□□□□ -2.09
HOXC9P31274 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2□□□□□ -2.09
HOXC9P31274 AC067942.3-201ENST00000512025 362 ntBASIC2□□□□□ -2.09
HOXC9P31274 SNORA40.14-201ENST00000516543 86 ntBASIC2□□□□□ -2.09
HOXC9P31274 CYCSP23-201ENST00000519781 313 ntBASIC2□□□□□ -2.09
HOXC9P31274 MIR3169-201ENST00000578032 83 ntBASIC2□□□□□ -2.09
HOXC9P31274 MIR4659A-201ENST00000580269 81 ntBASIC2□□□□□ -2.09
HOXC9P31274 AC016925.2-201ENST00000605108 242 ntBASIC2□□□□□ -2.09
HOXC9P31274 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2□□□□□ -2.09
HOXC9P31274 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
HOXC9P31274 ZNF209P-201ENST00000593450 2304 ntBASIC2□□□□□ -2.09
HOXC9P31274 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC9P31274 MIR1283-2-201ENST00000408621 87 ntBASIC1.99□□□□□ -2.09
HOXC9P31274 RAB28P5-201ENST00000427490 651 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms