Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU4-80P-201ENST00000363200 141 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 Y_RNA.150-201ENST00000363562 102 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 SNORA25.6-201ENST00000364121 118 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 Y_RNA.270-201ENST00000364693 104 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 RNA5SP125-201ENST00000364843 120 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 SNORD87-201ENST00000364849 89 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 SNORA70B-201ENST00000384210 135 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 RNU6-662P-201ENST00000384253 104 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXD9P28356 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXD9P28356 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXD9P28356 TOMM22P2-201ENST00000430735 237 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 AC090515.1-201ENST00000465295 476 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 Y_RNA.679-201ENST00000516416 91 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXD9P28356 MIR4658-201ENST00000584344 65 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 MIR5739-201ENST00000619803 80 ntBASIC2.4□□□□□ -2.03
HOXD9P28356 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HOXD9P28356 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXD9P28356 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXD9P28356 RNU1-72P-201ENST00000362976 153 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 VTRNA1-1-201ENST00000363120 99 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 Y_RNA.243-201ENST00000364481 109 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 MIR586-201ENST00000385035 97 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 U3.40-201ENST00000408706 208 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
HOXD9P28356 AC104332.1-201ENST00000440471 797 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 CKS1BP2-201ENST00000497342 240 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 RNU6-107P-201ENST00000516643 102 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 AC024405.2-202ENST00000532731 184 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 AP002392.1-201ENST00000537692 208 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXD9P28356 MIR3670-2-201ENST00000582974 65 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 MIR5007-201ENST00000583098 95 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 MIR3670-1-201ENST00000584160 65 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 MIR3670-3-201ENST00000584855 65 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD9P28356 DEFB117-201ENST00000602356 141 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 AL670379.2-201ENST00000604983 252 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD9P28356 MIR3670-4-201ENST00000612260 65 ntBASIC2.39□□□□□ -2.03
HOXD9P28356 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXD9P28356 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD9P28356 MIR6073-201ENST00000352083 89 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 SNORD115-30-201ENST00000364117 82 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 Y_RNA.329-201ENST00000365209 107 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 Y_RNA.464-201ENST00000384282 110 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 RN7SKP223-201ENST00000410582 62 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 RNU2-63P-201ENST00000410792 194 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 AC003685.2-201ENST00000422795 395 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD9P28356 AL356320.1-201ENST00000429616 163 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 AC018634.1-201ENST00000437554 401 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 AC107393.1-201ENST00000512403 346 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 RNU1-117P-201ENST00000517041 158 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.38□□□□□ -2.03
HOXD9P28356 MIR3145-201ENST00000580727 82 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 AC072026.1-201ENST00000605023 201 ntBASIC2.38□□□□□ -2.03
HOXD9P28356 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
HOXD9P28356 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.37□□□□□ -2.03
HOXD9P28356 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXD9P28356 RNU6-682P-201ENST00000363843 106 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 Y_RNA.361-201ENST00000365515 120 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 MIR548B-201ENST00000385247 97 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
HOXD9P28356 RNA5SP425-201ENST00000410336 112 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 Y_RNA.597-201ENST00000410463 100 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 AC007064.1-201ENST00000412238 351 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 AL135786.1-201ENST00000415892 214 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 RPS15AP28-201ENST00000435088 386 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 CYP2C59P-201ENST00000457790 269 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 RNU6-1212P-201ENST00000517023 104 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 AP005660.1-201ENST00000522972 293 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 AC018630.3-201ENST00000542637 96 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 AC004486.1-201ENST00000546846 233 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 AC005828.6-201ENST00000606610 232 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.37□□□□□ -2.03
HOXD9P28356 snoU18.1-201ENST00000629629 71 ntBASIC2.37□□□□□ -2.03
HOXD9P28356 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
HOXD9P28356 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
HOXD9P28356 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
HOXD9P28356 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
HOXD9P28356 U8.2-201ENST00000363156 134 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 RNU6-1020P-201ENST00000363684 107 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 Y_RNA.304-201ENST00000365011 112 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 RNU6-211P-201ENST00000384047 107 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 RN7SKP284-201ENST00000411002 343 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 RN7SKP192-201ENST00000411291 327 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD9P28356 AC024067.1-201ENST00000426199 223 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.36□□□□□ -2.03
HOXD9P28356 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
HOXD9P28356 RNU6-1098P-201ENST00000516772 96 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 RNU6-826P-201ENST00000516827 104 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXD9P28356 AL713866.2-201ENST00000603579 219 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms