Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 MTND5P16-201ENST00000460269 1703 ntBASIC0.24□□□□□ -2.37
LIMS3P0CW19 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.23□□□□□ -2.37
LIMS3P0CW19 Y_RNA.179-201ENST00000363844 90 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 Y_RNA.378-201ENST00000365652 113 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 SNORA26.8-201ENST00000391306 124 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.23□□□□□ -2.37
LIMS3P0CW19 ZNF885P-201ENST00000420174 1098 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 Z82188.1-201ENST00000436709 154 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.23□□□□□ -2.37
LIMS3P0CW19 AC107401.1-201ENST00000503426 685 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 CYCTP-201ENST00000504253 315 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 AC093303.1-201ENST00000514549 295 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 SNORA68.3-201ENST00000515906 83 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 RNU6-1053P-201ENST00000515930 101 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC0.23□□□□□ -2.37
LIMS3P0CW19 RNU6-94P-201ENST00000607728 107 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 AC027279.3-201ENST00000625055 122 ntBASIC0.23□□□□□ -2.37
LIMS3P0CW19 MIRLET7D-201ENST00000362263 87 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 RNU6-376P-201ENST00000384731 106 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 MIR452-201ENST00000385020 85 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 SNORD105-201ENST00000386910 85 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 RNU6-159P-201ENST00000391080 106 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 MTATP6P19-201ENST00000413797 659 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 MRPS18CP6-201ENST00000423587 223 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 RPS29P1-201ENST00000465274 159 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 RNU6-1291P-201ENST00000516591 104 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 RNU6-1116P-201ENST00000517269 99 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 AC091144.1-201ENST00000519573 138 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 AL358944.1-201ENST00000528537 144 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 AL118558.2-201ENST00000556294 238 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 MIR3684-201ENST00000579779 74 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 PIGPP4-201ENST00000584447 307 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 AL008636.1-201ENST00000625038 1018 ntBASIC0.22□□□□□ -2.37
LIMS3P0CW19 AC073544.1-201ENST00000600110 1595 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 SNORA25.3-201ENST00000363205 127 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 SNORD114-22-201ENST00000365423 72 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 RNU6-1103P-201ENST00000384150 107 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 SNORA20B-201ENST00000384220 132 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 RNU6-1297P-201ENST00000384415 104 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 RNU6-342P-201ENST00000384521 104 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 MIR140-201ENST00000385282 100 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 AC073464.1-201ENST00000429823 534 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 Z98949.2-201ENST00000440996 144 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 RNA5SP401-201ENST00000515920 127 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 RNU6-1332P-201ENST00000516666 104 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 AF235103.2-201ENST00000525753 346 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 AC036111.3-201ENST00000526389 112 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.21□□□□□ -2.38
LIMS3P0CW19 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.21□□□□□ -2.38
LIMS3P0CW19 AC120024.3-201ENST00000603167 156 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 AL136370.1-201ENST00000608166 691 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 AC009248.2-201ENST00000619826 254 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 AC100810.6-201ENST00000638068 285 ntBASIC0.21□□□□□ -2.38
LIMS3P0CW19 RNU4-41P-201ENST00000364426 143 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RNU4-66P-201ENST00000365199 138 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RNU6-38P-201ENST00000384085 107 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 MIR216A-201ENST00000385063 110 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 MIR520G-201ENST00000385064 90 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 EIF4E2P1-201ENST00000393781 255 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 MIR1827-201ENST00000408549 66 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.2□□□□□ -2.38
LIMS3P0CW19 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC0.2□□□□□ -2.38
LIMS3P0CW19 AC091885.1-201ENST00000506658 268 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RNA5SP20-201ENST00000515976 84 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RNU6-1278P-201ENST00000516130 107 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RN7SKP164-201ENST00000516138 266 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RNU6-107P-201ENST00000516643 102 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RNU11-2P-201ENST00000516898 142 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.2□□□□□ -2.38
LIMS3P0CW19 AC026371.1-201ENST00000551867 419 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 AC040904.1-201ENST00000590850 223 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 Z94722.1-201ENST00000604328 474 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 AC027449.1-201ENST00000608890 407 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 AC073534.2-201ENST00000620377 381 ntBASIC0.2□□□□□ -2.38
LIMS3P0CW19 RNA5SP48-201ENST00000363969 126 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 RNU6-407P-201ENST00000365280 104 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 RNU6-348P-201ENST00000384386 107 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 RNU6-790P-201ENST00000384479 105 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 MIR520C-201ENST00000385005 87 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 CALM2P3-201ENST00000400429 449 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 RNU5A-5P-201ENST00000411054 116 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 RNU6-177P-201ENST00000411257 104 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 AC018865.2-201ENST00000423631 129 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 MTCO1P20-201ENST00000425366 358 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 AL603825.1-201ENST00000438481 80 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 AL031667.1-201ENST00000440222 725 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 RPS20P10-201ENST00000451209 253 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 SNORA40.12-201ENST00000516329 111 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 UBL5P4-201ENST00000562584 236 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 AC092807.2-201ENST00000609367 243 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 AL359757.2-201ENST00000624309 274 ntBASIC0.19□□□□□ -2.38
LIMS3P0CW19 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.19□□□□□ -2.38
LIMS3P0CW19 AL442644.1-201ENST00000454390 3105 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 SNORD113-7-201ENST00000363762 77 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 RNU6-1327P-201ENST00000365302 105 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 MTCYBP4-201ENST00000401524 249 ntBASIC0.18□□□□□ -2.38
LIMS3P0CW19 MIR1276-201ENST00000408707 83 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 218 ms