Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL390123.1-201ENST00000603216 237 ntBASIC2.13□□□□□ -2.07
HMGB1P09429 MIR6079-201ENST00000635807 62 ntBASIC2.13□□□□□ -2.07
HMGB1P09429 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HMGB1P09429 RNU1-22P-201ENST00000363334 158 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 Y_RNA.166-201ENST00000363730 102 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 RNU6-318P-201ENST00000384283 103 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 RNU6-376P-201ENST00000384731 106 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 AC018865.2-201ENST00000423631 129 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 AL121890.1-201ENST00000435457 205 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 RNU6-120P-201ENST00000516077 103 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 AL512310.8-201ENST00000550183 120 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 AC024614.2-201ENST00000577584 372 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 MIR3684-201ENST00000579779 74 ntBASIC2.12□□□□□ -2.07
HMGB1P09429 Y_RNA.265-201ENST00000364677 108 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 Y_RNA.267-201ENST00000364679 109 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 SNORD81.2-201ENST00000365153 76 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 MIR9-3-201ENST00000385084 90 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 RNU11-5P-201ENST00000391216 129 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 SNORD12B-201ENST00000410433 91 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 RNU6-955P-201ENST00000410497 104 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.11□□□□□ -2.07
HMGB1P09429 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.11□□□□□ -2.07
HMGB1P09429 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.11□□□□□ -2.07
HMGB1P09429 Y_RNA.691-201ENST00000516611 103 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.11□□□□□ -2.07
HMGB1P09429 AP003033.1-201ENST00000527244 415 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 MIR3618-201ENST00000580330 88 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 AL162424.1-201ENST00000602325 221 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 AC073349.3-201ENST00000617616 186 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 AC106754.2-201ENST00000623006 233 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 MIR3674-201ENST00000636576 68 ntBASIC2.11□□□□□ -2.07
HMGB1P09429 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HMGB1P09429 SNORD26-201ENST00000384147 75 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 MIR583-201ENST00000384846 75 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.1□□□□□ -2.07
HMGB1P09429 SDAD1P3-201ENST00000427380 333 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 RAB28P5-201ENST00000427490 651 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.1□□□□□ -2.07
HMGB1P09429 RPS29P11-201ENST00000496507 171 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 RNU2-56P-201ENST00000516826 190 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 RN7SKP88-201ENST00000516847 250 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 AC019288.1-201ENST00000557918 224 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 SNORA28-201ENST00000606769 126 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 7SK.8-201ENST00000612110 250 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 7SK.11-201ENST00000615477 250 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 7SK.13-201ENST00000622040 250 ntBASIC2.1□□□□□ -2.07
HMGB1P09429 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HMGB1P09429 MIR625-201ENST00000385047 85 ntBASIC2.09□□□□□ -2.07
HMGB1P09429 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.09□□□□□ -2.07
HMGB1P09429 AC003989.2-201ENST00000440224 169 ntBASIC2.09□□□□□ -2.07
HMGB1P09429 RPL30P7-201ENST00000479312 323 ntBASIC2.09□□□□□ -2.07
HMGB1P09429 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.09□□□□□ -2.07
HMGB1P09429 AL161670.1-201ENST00000554348 137 ntBASIC2.09□□□□□ -2.07
HMGB1P09429 MIR5690-201ENST00000583739 73 ntBASIC2.09□□□□□ -2.07
HMGB1P09429 MIR8065-201ENST00000620577 100 ntBASIC2.09□□□□□ -2.07
HMGB1P09429 MTND5P10-201ENST00000603719 1809 ntBASIC2.09□□□□□ -2.08
HMGB1P09429 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
HMGB1P09429 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.08□□□□□ -2.08
HMGB1P09429 SNORA27.1-201ENST00000362604 124 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 Y_RNA.646-201ENST00000410980 101 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.08□□□□□ -2.08
HMGB1P09429 AC091021.1-201ENST00000468051 388 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 AC082651.2-201ENST00000496833 166 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 AC022493.2-201ENST00000506122 481 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 MIR4778-201ENST00000577635 80 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 AL513423.1-201ENST00000621695 132 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 U6.115-201ENST00000636045 103 ntBASIC2.08□□□□□ -2.08
HMGB1P09429 U8.13-201ENST00000390842 128 ntBASIC2.07□□□□□ -2.08
HMGB1P09429 SNORA69.1-201ENST00000390904 137 ntBASIC2.07□□□□□ -2.08
HMGB1P09429 AL160236.1-201ENST00000556317 195 ntBASIC2.07□□□□□ -2.08
HMGB1P09429 MIR3945-201ENST00000581853 98 ntBASIC2.07□□□□□ -2.08
HMGB1P09429 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
HMGB1P09429 AC022306.2-201ENST00000617563 647 ntBASIC2.07□□□□□ -2.08
HMGB1P09429 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.07□□□□□ -2.08
HMGB1P09429 RNU6-1301P-201ENST00000362724 104 ntBASIC2.06□□□□□ -2.08
HMGB1P09429 SNORD48-201ENST00000364953 64 ntBASIC2.06□□□□□ -2.08
HMGB1P09429 RNU6-310P-201ENST00000384655 107 ntBASIC2.06□□□□□ -2.08
HMGB1P09429 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
HMGB1P09429 SNORA12.1-201ENST00000390873 148 ntBASIC2.06□□□□□ -2.08
HMGB1P09429 SNORA40.18-201ENST00000391200 128 ntBASIC2.06□□□□□ -2.08
HMGB1P09429 RNU6-1156P-201ENST00000410365 100 ntBASIC2.06□□□□□ -2.08
HMGB1P09429 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.06□□□□□ -2.08
HMGB1P09429 AP002001.1-203ENST00000534002 267 ntBASIC2.06□□□□□ -2.08
HMGB1P09429 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.06□□□□□ -2.08
HMGB1P09429 AC006026.1-201ENST00000444025 1803 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 RNU6-926P-201ENST00000384075 107 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 FGF7P8-201ENST00000402994 292 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 RPL30P15-201ENST00000457129 321 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 RNU6-408P-201ENST00000515910 100 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 RNU6-1278P-201ENST00000516130 107 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 MIR2355-201ENST00000517199 87 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 MIR3664-201ENST00000579074 99 ntBASIC2.05□□□□□ -2.08
HMGB1P09429 RNU6-1188P-201ENST00000363795 107 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 RNU6-454P-201ENST00000364292 107 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.04□□□□□ -2.08
HMGB1P09429 RNU6-136P-201ENST00000384663 107 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 Y_RNA.577-201ENST00000384794 101 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 RN7SKP51-201ENST00000410781 304 ntBASIC2.04□□□□□ -2.08
HMGB1P09429 RNU7-169P-201ENST00000459456 61 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms