Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM35Q9UPQ4 AC006504.1-201ENST00000562493 3666 ntBASIC4.96□□□□□ -1.61
TRIM35Q9UPQ4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
TRIM35Q9UPQ4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 SNORA11-201ENST00000408789 128 ntBASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 RNA5SP144-201ENST00000410846 116 ntBASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 SNORD108-201ENST00000459332 71 ntBASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 RNU7-25P-201ENST00000516544 62 ntBASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
TRIM35Q9UPQ4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 MFSD8-236ENST00000641509 4050 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 MIR448-201ENST00000362131 111 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 RNU6-457P-201ENST00000363999 107 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 RNU6-234P-201ENST00000365229 104 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 MIR802-201ENST00000390235 94 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 Y_RNA.609-201ENST00000410669 89 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 RNU6-523P-201ENST00000516304 54 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 SNORA18.7-201ENST00000516910 131 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 AC091544.4-201ENST00000555268 342 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 AC006441.5-201ENST00000612680 209 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
TRIM35Q9UPQ4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 Y_RNA.299-201ENST00000364973 94 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 RNU6-524P-201ENST00000384270 107 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 MIR1294-201ENST00000408503 142 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 RNA5SP104-201ENST00000410989 118 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 AL022718.1-201ENST00000412004 84 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 AL512326.2-201ENST00000426359 151 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 AC090255.1-201ENST00000495779 349 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 HIGD1AP1-201ENST00000550979 275 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 MIR5187-201ENST00000583479 76 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 AC078899.2-201ENST00000595282 212 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 AL136964.1-201ENST00000622038 2990 ntBASIC4.94□□□□□ -1.62
TRIM35Q9UPQ4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 Y_RNA.340-201ENST00000365330 92 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 RN7SKP202-201ENST00000410439 330 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 RN7SKP200-201ENST00000410564 320 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 Z98742.3-201ENST00000418637 326 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 AL445646.1-201ENST00000431784 216 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 AC233266.1-201ENST00000454518 96 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 SNRPGP5-201ENST00000456003 220 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 TRBV12-2-201ENST00000489763 344 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 AC006445.1-201ENST00000491925 405 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 AC242852.1-201ENST00000612151 96 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 AC244015.1-201ENST00000622301 99 ntBASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM35Q9UPQ4 AP003122.5-201ENST00000527668 3766 ntBASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 SNORA73.2-201ENST00000364946 201 ntBASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 MIR1183-201ENST00000408856 89 ntBASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 RNU2-34P-201ENST00000516534 121 ntBASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 RNU1-45P-201ENST00000517191 141 ntBASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 AC112200.1-201ENST00000625015 234 ntBASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.92□□□□□ -1.62
TRIM35Q9UPQ4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 AC027290.2-201ENST00000623210 18662 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 MIR126-201ENST00000362291 85 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 RNU6-315P-201ENST00000362666 107 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 SNORD115-27-201ENST00000364430 82 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 Y_RNA.547-201ENST00000384654 119 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 RNU6-987P-201ENST00000384759 104 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 RAB6C-AS1-202ENST00000433431 123 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 RPL30P14-201ENST00000482744 348 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 AC103810.7-201ENST00000607821 91 ntBASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
TRIM35Q9UPQ4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 384.5 ms