Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VSX1Q9NZR4 AL049779.4-201ENST00000604500 156 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 AC011921.3-201ENST00000605540 361 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.54□□□□□ -2
VSX1Q9NZR4 snoU18.1-201ENST00000629629 71 ntBASIC2.54□□□□□ -2
VSX1Q9NZR4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.54□□□□□ -2
VSX1Q9NZR4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.54□□□□□ -2
VSX1Q9NZR4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.53□□□□□ -2
VSX1Q9NZR4 MIR422A-201ENST00000362286 90 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 Y_RNA.180-201ENST00000363867 113 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 RNU6-211P-201ENST00000384047 107 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 Y_RNA.435-201ENST00000384095 112 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 RNU6-220P-201ENST00000390919 107 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.53□□□□□ -2
VSX1Q9NZR4 AC123900.1-201ENST00000420390 96 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 AL445687.1-201ENST00000439946 251 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.53□□□□□ -2
VSX1Q9NZR4 AC093259.1-201ENST00000509755 300 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 SNORA4.4-201ENST00000515921 135 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 SNORD116-28-201ENST00000516123 91 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 SNORA9.3-201ENST00000516383 129 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 AP002392.1-201ENST00000537692 208 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 AC004486.1-201ENST00000546846 233 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 MIR3200-201ENST00000580767 85 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 MIR5194-201ENST00000582634 120 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.53□□□□□ -2
VSX1Q9NZR4 MIR3117-201ENST00000584034 78 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.53□□□□□ -2
VSX1Q9NZR4 AL161756.2-201ENST00000604597 246 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 MIR1248-201ENST00000629190 106 ntBASIC2.53□□□□□ -2
VSX1Q9NZR4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VSX1Q9NZR4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
VSX1Q9NZR4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
VSX1Q9NZR4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 Y_RNA.287-201ENST00000364853 94 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 Y_RNA.332-201ENST00000365271 113 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 SNORA48.2-201ENST00000390926 124 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 AC104332.1-201ENST00000440471 797 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 RPL36AP21-201ENST00000490372 323 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 SCGB1D5P-201ENST00000515134 247 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 RNA5SP367-201ENST00000516557 118 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 SCARNA13-201ENST00000516672 275 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 MIR3605-201ENST00000583214 100 ntBASIC2.52□□□□□ -2.01
VSX1Q9NZR4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.52□□□□□ -2.01
VSX1Q9NZR4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VSX1Q9NZR4 MIR26A1-201ENST00000362205 77 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 RNU6-899P-201ENST00000363947 107 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 RNU6-1240P-201ENST00000365155 104 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 Y_RNA.341-201ENST00000365341 102 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 RNU11-5P-201ENST00000391216 129 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 RPL23AP7-203ENST00000449021 469 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 AC003982.1-202ENST00000469928 248 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.51□□□□□ -2.01
VSX1Q9NZR4 RNA5SP341-201ENST00000516261 117 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 AC024405.2-202ENST00000532731 184 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 NDUFA5P6-201ENST00000542110 379 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 MIR5195-201ENST00000583555 115 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.51□□□□□ -2.01
VSX1Q9NZR4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.51□□□□□ -2.01
VSX1Q9NZR4 AC073346.2-201ENST00000624724 2058 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
VSX1Q9NZR4 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.51□□□□□ -2.01
VSX1Q9NZR4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.51□□□□□ -2.01
VSX1Q9NZR4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.5□□□□□ -2.01
VSX1Q9NZR4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.5□□□□□ -2.01
VSX1Q9NZR4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
VSX1Q9NZR4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
VSX1Q9NZR4 RNU6-1062P-201ENST00000383908 107 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 RNU6-144P-201ENST00000383951 107 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 MIR128-1-201ENST00000384921 82 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 AL355497.1-201ENST00000406262 551 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 RNU6-57P-201ENST00000411348 103 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 SRIP3-201ENST00000413200 219 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 BTF3P11-201ENST00000426582 477 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 SNORD65B-201ENST00000459126 73 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.5□□□□□ -2.01
VSX1Q9NZR4 RNU1-104P-201ENST00000517280 175 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 AC025647.1-201ENST00000517879 253 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 AC090616.3-201ENST00000582184 217 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 AC025754.2-201ENST00000606491 432 ntBASIC2.5□□□□□ -2.01
VSX1Q9NZR4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
VSX1Q9NZR4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.49□□□□□ -2.01
VSX1Q9NZR4 SNORA27.1-201ENST00000362604 124 ntBASIC2.49□□□□□ -2.01
VSX1Q9NZR4 Y_RNA.310-201ENST00000365063 113 ntBASIC2.49□□□□□ -2.01
VSX1Q9NZR4 SNORA20B-201ENST00000384220 132 ntBASIC2.49□□□□□ -2.01
VSX1Q9NZR4 RNU6-886P-201ENST00000384319 105 ntBASIC2.49□□□□□ -2.01
VSX1Q9NZR4 RNU6-855P-201ENST00000410395 104 ntBASIC2.49□□□□□ -2.01
VSX1Q9NZR4 RNU6-651P-201ENST00000411040 105 ntBASIC2.49□□□□□ -2.01
VSX1Q9NZR4 MTCO1P44-201ENST00000441935 243 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 147.2 ms