Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MTND1P27-201ENST00000451117 902 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 RPL39P39-201ENST00000455840 151 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 RPL23AP75-201ENST00000491601 451 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.57□□□□□ -2.32
USP42Q9H9J4 RNU6-344P-201ENST00000516635 111 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 RNU1-117P-201ENST00000517041 158 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.57□□□□□ -2.32
USP42Q9H9J4 AC007834.2-201ENST00000536310 343 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 AL157687.1-201ENST00000554853 619 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.57□□□□□ -2.32
USP42Q9H9J4 FRG2DP-202ENST00000566967 323 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.57□□□□□ -2.32
USP42Q9H9J4 SNRPGP20-201ENST00000604477 205 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 AC073349.3-201ENST00000617616 186 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.57□□□□□ -2.32
USP42Q9H9J4 AL078596.1-201ENST00000624856 447 ntBASIC0.57□□□□□ -2.32
USP42Q9H9J4 RNA5SP62-201ENST00000363457 110 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 Y_RNA.167-201ENST00000363735 109 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RNU6-1240P-201ENST00000365155 104 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RNU6-38P-201ENST00000384085 107 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RNU6-1103P-201ENST00000384150 107 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RNU6-784P-201ENST00000384330 106 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RNY3P9-201ENST00000384727 106 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 MRPL42P3-201ENST00000401492 326 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.56□□□□□ -2.32
USP42Q9H9J4 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.56□□□□□ -2.32
USP42Q9H9J4 AL606489.2-201ENST00000433886 234 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.56□□□□□ -2.32
USP42Q9H9J4 USP9YP29-201ENST00000445112 563 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 U8.21-201ENST00000459536 136 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 SRRM1P2-201ENST00000464531 1192 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC0.56□□□□□ -2.32
USP42Q9H9J4 BET1P1-201ENST00000482276 359 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RPS26P48-201ENST00000491713 339 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RNA5SP454-201ENST00000517231 127 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 MTND1P5-201ENST00000517906 940 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 MTND1P35-201ENST00000526739 508 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 MTATP6P24-201ENST00000576835 677 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 AC004223.2-201ENST00000590309 544 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 AC092747.3-201ENST00000603769 301 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 AL357078.3-201ENST00000607528 618 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.56□□□□□ -2.32
USP42Q9H9J4 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.56□□□□□ -2.32
USP42Q9H9J4 RNU4-20P-201ENST00000365601 151 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 RNU6-969P-201ENST00000383900 105 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 MIR653-201ENST00000385279 96 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
USP42Q9H9J4 AL451046.2-201ENST00000403074 277 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.55□□□□□ -2.32
USP42Q9H9J4 RPEP5-201ENST00000441137 268 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 RPS27P22-201ENST00000478056 241 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 APOOP3-201ENST00000536787 586 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 AC109347.2-201ENST00000610220 349 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 U6.73-201ENST00000619194 103 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 AC137590.2-201ENST00000619709 240 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 AL513423.1-201ENST00000621695 132 ntBASIC0.55□□□□□ -2.32
USP42Q9H9J4 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.55□□□□□ -2.32
USP42Q9H9J4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.55□□□□□ -2.32
USP42Q9H9J4 AP000568.1-201ENST00000282964 442 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 Y_RNA.169-201ENST00000363745 96 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 SNORD87-201ENST00000364849 89 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 RNU5A-6P-201ENST00000384136 116 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 SNORA75-201ENST00000384158 137 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 MIR660-201ENST00000385235 97 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 RN7SKP142-201ENST00000411236 328 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 AC008134.1-201ENST00000420943 193 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.54□□□□□ -2.32
USP42Q9H9J4 MTCO2P16-201ENST00000436962 677 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 SNORA40.12-201ENST00000516329 111 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 RNA5SP255-201ENST00000516370 107 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 AC004584.2-201ENST00000570407 410 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 MIR8076-201ENST00000611401 83 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 FAM157A-202ENST00000615155 405 ntBASIC0.54□□□□□ -2.32
USP42Q9H9J4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
USP42Q9H9J4 RNU6-199P-201ENST00000362954 107 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 SNORD50.1-201ENST00000362987 71 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 RNU6-82P-201ENST00000363970 107 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 MIR521-1-201ENST00000384902 87 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 MIR1185-2-201ENST00000408687 86 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.53□□□□□ -2.32
USP42Q9H9J4 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.53□□□□□ -2.32
USP42Q9H9J4 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.53□□□□□ -2.32
USP42Q9H9J4 AL359672.1-201ENST00000442302 409 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 AC079354.2-201ENST00000453523 154 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.53□□□□□ -2.32
USP42Q9H9J4 RNU6-917P-201ENST00000516294 104 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 MIR4514-201ENST00000581410 57 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.53□□□□□ -2.32
USP42Q9H9J4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.33
USP42Q9H9J4 Y_RNA.100-201ENST00000363141 102 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.52□□□□□ -2.33
USP42Q9H9J4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
USP42Q9H9J4 MIR320B2-201ENST00000408479 138 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 AC073464.1-201ENST00000429823 534 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 Z82188.1-201ENST00000436709 154 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 MTCO3P18-201ENST00000440206 761 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 TPT1P7-201ENST00000458300 517 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 RNU7-99P-201ENST00000516271 62 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms