Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 BTF3P11-201ENST00000426582 477 ntBASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 SNORD14A-201ENST00000606526 91 ntBASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 U6.73-201ENST00000619194 103 ntBASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 MIR338-201ENST00000636369 67 ntBASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
TRAIPQ9BWF2 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 AL356292.1-201ENST00000283110 373 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 RNU1-52P-201ENST00000384190 164 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 MIR524-201ENST00000385242 87 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 RNA5SP465-201ENST00000391195 109 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 MIR887-201ENST00000401258 79 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 AC097462.1-201ENST00000514125 324 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 RNA5SP341-201ENST00000516261 117 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 MIR3169-201ENST00000578032 83 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 AC093732.2-201ENST00000607950 274 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 AC078938.1-201ENST00000620993 318 ntBASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRAIPQ9BWF2 RNU6-1272P-201ENST00000362776 107 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.82-201ENST00000363000 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.92-201ENST00000363043 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.117-201ENST00000363294 101 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 RNU1-96P-201ENST00000364163 162 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.217-201ENST00000364214 105 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.235-201ENST00000364412 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.306-201ENST00000365015 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.312-201ENST00000365089 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.322-201ENST00000365151 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 AC007064.1-201ENST00000412238 351 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 BX510359.4-201ENST00000423750 193 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 CST2P1-201ENST00000425770 87 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.650-201ENST00000459002 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.641-201ENST00000459414 105 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.777-201ENST00000516982 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.771-201ENST00000598668 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 Y_RNA.789-201ENST00000622480 102 ntBASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
TRAIPQ9BWF2 RNU1-22P-201ENST00000363334 158 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AC108059.2-201ENST00000434626 151 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 RPS20P10-201ENST00000451209 253 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AC068657.1-201ENST00000520807 306 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 MIR3668-201ENST00000582138 75 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AL162274.2-201ENST00000614406 332 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AL078604.3-201ENST00000615580 211 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AC073349.3-201ENST00000617616 186 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 AC068647.2-201ENST00000637380 353 ntBASIC3.46□□□□□ -1.86
TRAIPQ9BWF2 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 RNU6-862P-201ENST00000362804 105 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 RNU6-899P-201ENST00000363947 107 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 Y_RNA.269-201ENST00000364685 89 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 Y_RNA.310-201ENST00000365063 113 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 MIR518A2-201ENST00000384966 87 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 HMGN2P39-201ENST00000398005 273 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 RNU7-99P-201ENST00000516271 62 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 RNU6-794P-201ENST00000517261 64 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 EIF4BP1-201ENST00000554881 351 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 AC005972.2-201ENST00000604690 348 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 uc_338.25-201ENST00000613756 156 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 snoU18.1-201ENST00000629629 71 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 AC093010.3-201ENST00000570269 15214 ntBASIC3.45□□□□□ -1.86
TRAIPQ9BWF2 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 Y_RNA.122-201ENST00000363331 96 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 Y_RNA.539-201ENST00000384635 107 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 Y_RNA.638-201ENST00000459374 113 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 RPL36AP21-201ENST00000490372 323 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 AC008885.1-201ENST00000514930 301 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 RNU7-116P-201ENST00000516940 62 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 SCARNA20.6-201ENST00000517251 106 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 AC024995.1-201ENST00000523014 93 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 LARP7P3-201ENST00000579888 337 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 MIR5194-201ENST00000582634 120 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 AC078899.2-201ENST00000595282 212 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 AL442067.1-201ENST00000613261 223 ntBASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
TRAIPQ9BWF2 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TRAIPQ9BWF2 SNORA72.4-201ENST00000384174 132 ntBASIC3.43□□□□□ -1.86
TRAIPQ9BWF2 SNORA8-201ENST00000384574 139 ntBASIC3.43□□□□□ -1.86
TRAIPQ9BWF2 SNORA44-201ENST00000384584 132 ntBASIC3.43□□□□□ -1.86
TRAIPQ9BWF2 RNU6-763P-201ENST00000390865 106 ntBASIC3.43□□□□□ -1.86
TRAIPQ9BWF2 MTCO2P33-201ENST00000402100 465 ntBASIC3.43□□□□□ -1.86
TRAIPQ9BWF2 RN7SKP123-201ENST00000410732 291 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms