Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6-1175P-201ENST00000365200 107 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 RNU6-713P-201ENST00000384761 107 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 AL023284.1-201ENST00000403956 276 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 AC073910.1-201ENST00000445047 438 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 RNU6-221P-201ENST00000459541 99 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.61□□□□□ -1.99
NUP88Q99567 AC027419.1-201ENST00000522976 328 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.61□□□□□ -1.99
NUP88Q99567 MIR6766-201ENST00000622641 72 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.61□□□□□ -1.99
NUP88Q99567 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
NUP88Q99567 AC009487.4-201ENST00000624969 3585 ntBASIC2.61□□□□□ -1.99
NUP88Q99567 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
NUP88Q99567 Y_RNA.230-201ENST00000364348 109 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 SNORD114-6-201ENST00000364393 72 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 SNORA40.19-201ENST00000390846 128 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 MIR1289-2-201ENST00000408360 111 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 Y_RNA.602-201ENST00000410535 92 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 BX510359.4-201ENST00000423750 193 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 RNU6-155P-201ENST00000516347 100 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 RNU1-104P-201ENST00000517280 175 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 IGKV3-31-201ENST00000523109 329 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 AP002001.1-203ENST00000534002 267 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.6□□□□□ -1.99
NUP88Q99567 AC055872.1-201ENST00000570978 278 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.6□□□□□ -1.99
NUP88Q99567 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.6□□□□□ -1.99
NUP88Q99567 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.6□□□□□ -1.99
NUP88Q99567 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
NUP88Q99567 RNU6-1309P-201ENST00000363305 108 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 RNU6-770P-201ENST00000363929 105 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 RNU6-324P-201ENST00000363957 106 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 RNA5SP493-201ENST00000364115 91 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 RNU11-3P-201ENST00000391111 133 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 RNU4-30P-201ENST00000410245 143 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 AL390729.2-201ENST00000416137 156 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 ELOCP20-201ENST00000422460 345 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 HMGN2P34-201ENST00000437647 269 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 IPO7P1-201ENST00000442031 636 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.59□□□□□ -1.99
NUP88Q99567 RNU6-1143P-201ENST00000516125 104 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 RNU6-856P-201ENST00000516959 98 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 FO624990.1-201ENST00000636373 85 ntBASIC2.59□□□□□ -1.99
NUP88Q99567 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.59□□□□□ -2
NUP88Q99567 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
NUP88Q99567 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
NUP88Q99567 RNU1-58P-201ENST00000362413 163 ntBASIC2.58□□□□□ -2
NUP88Q99567 Y_RNA.214-201ENST00000364201 112 ntBASIC2.58□□□□□ -2
NUP88Q99567 RNU6-1164P-201ENST00000364428 107 ntBASIC2.58□□□□□ -2
NUP88Q99567 RNU6-1240P-201ENST00000365155 104 ntBASIC2.58□□□□□ -2
NUP88Q99567 Y_RNA.331-201ENST00000365267 102 ntBASIC2.58□□□□□ -2
NUP88Q99567 Y_RNA.462-201ENST00000384268 102 ntBASIC2.58□□□□□ -2
NUP88Q99567 RPL23AP36-201ENST00000413895 458 ntBASIC2.58□□□□□ -2
NUP88Q99567 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
NUP88Q99567 DYNLT3P2-201ENST00000442517 295 ntBASIC2.58□□□□□ -2
NUP88Q99567 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.58□□□□□ -2
NUP88Q99567 RNU1-131P-201ENST00000458943 161 ntBASIC2.58□□□□□ -2
NUP88Q99567 RNU6-1041P-201ENST00000516254 102 ntBASIC2.58□□□□□ -2
NUP88Q99567 RNU7-193P-201ENST00000516723 65 ntBASIC2.58□□□□□ -2
NUP88Q99567 SUMO2P18-201ENST00000518873 252 ntBASIC2.58□□□□□ -2
NUP88Q99567 AC087441.2-201ENST00000529141 262 ntBASIC2.58□□□□□ -2
NUP88Q99567 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.58□□□□□ -2
NUP88Q99567 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.58□□□□□ -2
NUP88Q99567 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.58□□□□□ -2
NUP88Q99567 AC136932.1-201ENST00000574771 208 ntBASIC2.58□□□□□ -2
NUP88Q99567 MIR4300-201ENST00000581016 96 ntBASIC2.58□□□□□ -2
NUP88Q99567 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
NUP88Q99567 AC005336.3-201ENST00000623833 2679 ntBASIC2.57□□□□□ -2
NUP88Q99567 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.57□□□□□ -2
NUP88Q99567 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
NUP88Q99567 MIR340-201ENST00000362125 95 ntBASIC2.57□□□□□ -2
NUP88Q99567 MIR410-201ENST00000362222 80 ntBASIC2.57□□□□□ -2
NUP88Q99567 Y_RNA.101-201ENST00000363154 102 ntBASIC2.57□□□□□ -2
NUP88Q99567 Y_RNA.176-201ENST00000363815 109 ntBASIC2.57□□□□□ -2
NUP88Q99567 Y_RNA.276-201ENST00000364732 109 ntBASIC2.57□□□□□ -2
NUP88Q99567 RNU1-138P-201ENST00000384093 164 ntBASIC2.57□□□□□ -2
NUP88Q99567 Y_RNA.570-201ENST00000384750 101 ntBASIC2.57□□□□□ -2
NUP88Q99567 MIR518A2-201ENST00000384966 87 ntBASIC2.57□□□□□ -2
NUP88Q99567 HMGN2P39-201ENST00000398005 273 ntBASIC2.57□□□□□ -2
NUP88Q99567 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.57□□□□□ -2
NUP88Q99567 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.57□□□□□ -2
NUP88Q99567 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.57□□□□□ -2
NUP88Q99567 AC025647.1-201ENST00000517879 253 ntBASIC2.57□□□□□ -2
NUP88Q99567 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.57□□□□□ -2
NUP88Q99567 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.57□□□□□ -2
NUP88Q99567 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.57□□□□□ -2
NUP88Q99567 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.57□□□□□ -2
NUP88Q99567 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.57□□□□□ -2
NUP88Q99567 MIRLET7G-201ENST00000362280 84 ntBASIC2.56□□□□□ -2
NUP88Q99567 SNORD113-8-201ENST00000363497 74 ntBASIC2.56□□□□□ -2
NUP88Q99567 Y_RNA.149-201ENST00000363558 117 ntBASIC2.56□□□□□ -2
NUP88Q99567 RNU6-454P-201ENST00000364292 107 ntBASIC2.56□□□□□ -2
NUP88Q99567 SNORA67.1-201ENST00000364749 141 ntBASIC2.56□□□□□ -2
NUP88Q99567 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.56□□□□□ -2
NUP88Q99567 Y_RNA.446-201ENST00000384178 104 ntBASIC2.56□□□□□ -2
NUP88Q99567 MIR597-201ENST00000384968 97 ntBASIC2.56□□□□□ -2
NUP88Q99567 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.56□□□□□ -2
NUP88Q99567 ATP5J2P3-201ENST00000451550 258 ntBASIC2.56□□□□□ -2
NUP88Q99567 AC005042.3-201ENST00000453230 174 ntBASIC2.56□□□□□ -2
NUP88Q99567 Y_RNA.638-201ENST00000459374 113 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms