Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MTND5P35-201ENST00000557537 1720 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 SNORD115-3-201ENST00000363100 82 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RNU6-280P-201ENST00000364145 104 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RNU6-245P-201ENST00000384020 107 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RNU6-1145P-201ENST00000384246 107 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RNY3P4-201ENST00000384428 101 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 MIR606-201ENST00000384851 96 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 MIR29C-201ENST00000385231 88 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 MIR1262-201ENST00000408276 93 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 SNORD12B-201ENST00000410433 91 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RNU6-130P-201ENST00000411112 103 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RN7SKP101-201ENST00000411376 320 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.85□□□□□ -2.11
USP28Q96RU2 AL118496.2-201ENST00000448300 230 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.85□□□□□ -2.11
USP28Q96RU2 PRELID3BP1-201ENST00000457142 540 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RPS23P5-201ENST00000495419 428 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RNU6-911P-201ENST00000516523 104 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 RNU6-1198P-201ENST00000516904 67 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 AL360085.1-201ENST00000604713 532 ntBASIC1.85□□□□□ -2.11
USP28Q96RU2 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USP28Q96RU2 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.84□□□□□ -2.11
USP28Q96RU2 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
USP28Q96RU2 MIR340-201ENST00000362125 95 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 Y_RNA.158-201ENST00000363651 101 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 Y_RNA.179-201ENST00000363844 90 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 RNU6-961P-201ENST00000363893 105 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 RNU6-793P-201ENST00000384233 104 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 RNU6-611P-201ENST00000384276 104 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 SNORA8-201ENST00000384574 139 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 AL627390.1-201ENST00000396055 340 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 AL590004.1-201ENST00000405321 300 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.84□□□□□ -2.11
USP28Q96RU2 U8.20-201ENST00000459445 131 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 HMGN2P9-201ENST00000476875 229 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 AC093259.1-201ENST00000509755 300 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USP28Q96RU2 RNA5SP490-201ENST00000517141 136 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 AP002001.1-203ENST00000534002 267 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 GNAI2P1-201ENST00000541815 315 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.84□□□□□ -2.11
USP28Q96RU2 MIR4255-201ENST00000579351 72 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.84□□□□□ -2.11
USP28Q96RU2 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.84□□□□□ -2.11
USP28Q96RU2 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
USP28Q96RU2 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.12
USP28Q96RU2 Y_RNA.27-201ENST00000362540 103 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 Y_RNA.153-201ENST00000363615 91 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 SNORD14.1-201ENST00000365609 90 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 Y_RNA.389-201ENST00000383924 113 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 RNU6-639P-201ENST00000384074 107 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 RNU6-1160P-201ENST00000384546 104 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 RNA5SP465-201ENST00000391195 109 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 ELOCP21-201ENST00000412558 336 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.83□□□□□ -2.12
USP28Q96RU2 AC016717.1-201ENST00000448918 286 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 AC245102.2-201ENST00000448956 180 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.83□□□□□ -2.12
USP28Q96RU2 RPL26P26-201ENST00000480251 434 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 SNORA40.9-201ENST00000515895 93 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 RNU6-475P-201ENST00000516073 104 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 Y_RNA.683-201ENST00000516508 93 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 RNU6-1012P-201ENST00000516606 109 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 RN7SKP49-201ENST00000516675 260 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 AC091144.1-201ENST00000519573 138 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.83□□□□□ -2.12
USP28Q96RU2 AC055872.1-201ENST00000570978 278 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 AC113195.1-201ENST00000579952 141 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 AC124312.5-201ENST00000604451 268 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 SNORD11B-201ENST00000607707 90 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.83□□□□□ -2.12
USP28Q96RU2 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
USP28Q96RU2 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.82□□□□□ -2.12
USP28Q96RU2 RNU1-62P-201ENST00000362599 164 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 RNU6-1305P-201ENST00000364353 104 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 Y_RNA.458-201ENST00000384240 102 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 RNU6-738P-201ENST00000384531 106 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 MIR504-201ENST00000385065 83 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 MTND2P23-201ENST00000422990 651 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 RPEP5-201ENST00000441137 268 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 AC007395.1-201ENST00000451333 677 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 MTATP8P1-201ENST00000467115 207 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 RNU6-397P-201ENST00000516226 104 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 RNU6-1046P-201ENST00000516538 107 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 RNU6-344P-201ENST00000516635 111 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 MIR2355-201ENST00000517199 87 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.82□□□□□ -2.12
USP28Q96RU2 MIR4659A-201ENST00000580269 81 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 RAC1P9-201ENST00000604990 392 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 AC116312.1-201ENST00000606841 314 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 AC240442.1-201ENST00000616055 283 ntBASIC1.82□□□□□ -2.12
USP28Q96RU2 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.82□□□□□ -2.12
USP28Q96RU2 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.82□□□□□ -2.12
USP28Q96RU2 Y_RNA.26-201ENST00000362539 101 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 SNORD31B-201ENST00000364977 69 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 RNU6-418P-201ENST00000384035 107 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 Y_RNA.424-201ENST00000384063 103 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 Y_RNA.455-201ENST00000384230 98 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 Y_RNA.471-201ENST00000384312 102 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms