Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC4.04□□□□□ -1.76
HLA-CQ95604 AC007229.1-201ENST00000590455 412 ntBASIC4.04□□□□□ -1.76
HLA-CQ95604 AL359075.3-201ENST00000613288 217 ntBASIC4.04□□□□□ -1.76
HLA-CQ95604 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.04□□□□□ -1.76
HLA-CQ95604 AL035470.1-201ENST00000622571 220 ntBASIC4.04□□□□□ -1.76
HLA-CQ95604 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
HLA-CQ95604 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.04□□□□□ -1.76
HLA-CQ95604 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HLA-CQ95604 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
HLA-CQ95604 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-CQ95604 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-CQ95604 Y_RNA.332-201ENST00000365271 113 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 RNU6-546P-201ENST00000383991 107 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 MIR548A2-201ENST00000384956 97 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 Y_RNA.621-201ENST00000411065 96 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 AC021205.2-201ENST00000480069 347 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 AC069240.1-201ENST00000548774 375 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.03□□□□□ -1.76
HLA-CQ95604 MIR7702-201ENST00000621931 59 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 MIR1248-201ENST00000629190 106 ntBASIC4.03□□□□□ -1.76
HLA-CQ95604 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
HLA-CQ95604 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-CQ95604 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HLA-CQ95604 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.03□□□□□ -1.77
HLA-CQ95604 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.77
HLA-CQ95604 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HLA-CQ95604 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
HLA-CQ95604 MIR448-201ENST00000362131 111 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HLA-CQ95604 MIR1251-201ENST00000408552 70 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 AC010469.1-201ENST00000463864 576 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 RN7SL271P-201ENST00000487601 295 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 AC093259.1-201ENST00000509755 300 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 MRPS36P2-201ENST00000512569 299 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC4.02□□□□□ -1.77
HLA-CQ95604 AC068657.1-201ENST00000520807 306 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 AP003327.1-201ENST00000529684 127 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 AC073413.2-201ENST00000604332 360 ntBASIC4.02□□□□□ -1.77
HLA-CQ95604 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.02□□□□□ -1.77
HLA-CQ95604 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HLA-CQ95604 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HLA-CQ95604 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.01□□□□□ -1.77
HLA-CQ95604 SNORA63.5-201ENST00000363548 123 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 Y_RNA.220-201ENST00000364244 109 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 RNU1-33P-201ENST00000364249 162 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 Y_RNA.362-201ENST00000365518 110 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 RNU6-49P-201ENST00000384256 107 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 RNU6-440P-201ENST00000390882 105 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 AC005326.1-201ENST00000429197 123 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.01□□□□□ -1.77
HLA-CQ95604 YPEL5P2-201ENST00000605553 359 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 5S_rRNA.11-201ENST00000618635 84 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HLA-CQ95604 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HLA-CQ95604 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HLA-CQ95604 AL365361.1-201ENST00000566942 3481 ntBASIC4.01□□□□□ -1.77
HLA-CQ95604 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HLA-CQ95604 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HLA-CQ95604 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HLA-CQ95604 Y_RNA.388-201ENST00000383919 113 ntBASIC4□□□□□ -1.77
HLA-CQ95604 MIR181B1-201ENST00000385240 110 ntBASIC4□□□□□ -1.77
HLA-CQ95604 AL117342.1-201ENST00000404861 406 ntBASIC4□□□□□ -1.77
HLA-CQ95604 CYCSP4-201ENST00000429682 331 ntBASIC4□□□□□ -1.77
HLA-CQ95604 RN7SL429P-201ENST00000479090 223 ntBASIC4□□□□□ -1.77
HLA-CQ95604 RN7SL489P-201ENST00000486185 223 ntBASIC4□□□□□ -1.77
HLA-CQ95604 RN7SL327P-201ENST00000488659 223 ntBASIC4□□□□□ -1.77
HLA-CQ95604 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC4□□□□□ -1.77
HLA-CQ95604 Y_RNA.666-201ENST00000516187 112 ntBASIC4□□□□□ -1.77
HLA-CQ95604 RNU6-341P-201ENST00000516973 96 ntBASIC4□□□□□ -1.77
HLA-CQ95604 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC4□□□□□ -1.77
HLA-CQ95604 MIR5009-201ENST00000578736 100 ntBASIC4□□□□□ -1.77
HLA-CQ95604 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC4□□□□□ -1.77
HLA-CQ95604 RN7SL853P-201ENST00000617250 223 ntBASIC4□□□□□ -1.77
HLA-CQ95604 AC134878.1-201ENST00000619901 243 ntBASIC4□□□□□ -1.77
HLA-CQ95604 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC4□□□□□ -1.77
HLA-CQ95604 SPATA31D2P-201ENST00000429999 4388 ntBASIC4□□□□□ -1.77
HLA-CQ95604 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HLA-CQ95604 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4□□□□□ -1.77
HLA-CQ95604 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
HLA-CQ95604 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HLA-CQ95604 ZNF271P-202ENST00000465539 1970 ntBASIC4□□□□□ -1.77
HLA-CQ95604 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HLA-CQ95604 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
HLA-CQ95604 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HLA-CQ95604 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
HLA-CQ95604 SNORA51.10-201ENST00000384418 136 ntBASIC3.99□□□□□ -1.77
HLA-CQ95604 MIR518F-201ENST00000384973 87 ntBASIC3.99□□□□□ -1.77
HLA-CQ95604 AL590004.2-201ENST00000404787 371 ntBASIC3.99□□□□□ -1.77
HLA-CQ95604 AC099677.2-201ENST00000436385 175 ntBASIC3.99□□□□□ -1.77
HLA-CQ95604 RNU6-762P-201ENST00000517107 102 ntBASIC3.99□□□□□ -1.77
HLA-CQ95604 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.99□□□□□ -1.77
HLA-CQ95604 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.99□□□□□ -1.77
HLA-CQ95604 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HLA-CQ95604 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
HLA-CQ95604 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HLA-CQ95604 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HLA-CQ95604 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HLA-CQ95604 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HLA-CQ95604 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HLA-CQ95604 AC091564.4-201ENST00000533934 2194 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms