Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 SNORD12B-201ENST00000410433 91 ntBASIC2.23□□□□□ -2.05
USP38Q8NB14 AC055731.1-201ENST00000474387 401 ntBASIC2.23□□□□□ -2.05
USP38Q8NB14 MIR2355-201ENST00000517199 87 ntBASIC2.23□□□□□ -2.05
USP38Q8NB14 AC087441.2-201ENST00000529141 262 ntBASIC2.23□□□□□ -2.05
USP38Q8NB14 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.23□□□□□ -2.05
USP38Q8NB14 MIR6779-201ENST00000617283 64 ntBASIC2.23□□□□□ -2.05
USP38Q8NB14 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.23□□□□□ -2.05
USP38Q8NB14 AC008873.1-201ENST00000625051 138 ntBASIC2.23□□□□□ -2.05
USP38Q8NB14 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
USP38Q8NB14 RNU6-1301P-201ENST00000362724 104 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 RNU4-52P-201ENST00000384209 138 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 RNU6-318P-201ENST00000384283 103 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 Y_RNA.496-201ENST00000384444 101 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 RNA5SP465-201ENST00000391195 109 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.22□□□□□ -2.05
USP38Q8NB14 AL357134.1-201ENST00000445848 426 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 RNU6-1041P-201ENST00000516254 102 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.22□□□□□ -2.05
USP38Q8NB14 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.22□□□□□ -2.05
USP38Q8NB14 Y_RNA.783-201ENST00000613546 102 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.22□□□□□ -2.05
USP38Q8NB14 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
USP38Q8NB14 Y_RNA.39-201ENST00000362620 98 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 Y_RNA.394-201ENST00000383942 103 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 RNU6-1145P-201ENST00000384246 107 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 Y_RNA.498-201ENST00000384460 102 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 RNA5SP450-201ENST00000411206 102 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 RPS20P15-201ENST00000412792 311 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 CHEK2P4-201ENST00000450340 246 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 PCNPP5-201ENST00000452246 481 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 RNU1-131P-201ENST00000458943 161 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 AC067942.3-201ENST00000512025 362 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 RN7SKP49-201ENST00000516675 260 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 SUMO2P18-201ENST00000518873 252 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 HSBP1P1-201ENST00000555205 166 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 MIR3169-201ENST00000578032 83 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.21□□□□□ -2.06
USP38Q8NB14 AL357075.2-201ENST00000614906 189 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 snoZ196.1-201ENST00000625269 89 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.21□□□□□ -2.06
USP38Q8NB14 CENPCP1-201ENST00000533085 2578 ntBASIC2.21□□□□□ -2.06
USP38Q8NB14 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP38Q8NB14 Y_RNA.80-201ENST00000362996 102 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 U3.8-201ENST00000363675 217 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 Y_RNA.252-201ENST00000364556 101 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 Y_RNA.485-201ENST00000384395 102 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 RNU6-1235P-201ENST00000384559 107 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
USP38Q8NB14 MIR1253-201ENST00000408273 105 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 AL139156.1-201ENST00000412785 841 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 MTCO2P12-201ENST00000427426 682 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.2□□□□□ -2.06
USP38Q8NB14 RNU6-498P-201ENST00000459468 107 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.2□□□□□ -2.06
USP38Q8NB14 MIR4287-201ENST00000579398 78 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 AC002984.1-201ENST00000591692 448 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 VN1R91P-201ENST00000594377 169 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 AC007485.1-201ENST00000616755 206 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 uc_338.22-201ENST00000622722 187 ntBASIC2.2□□□□□ -2.06
USP38Q8NB14 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
USP38Q8NB14 ZNF702P-202ENST00000434269 1966 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
USP38Q8NB14 AC008555.8-201ENST00000623602 2168 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 RNU6-708P-201ENST00000384217 107 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
USP38Q8NB14 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.19□□□□□ -2.06
USP38Q8NB14 ATP5J2P3-201ENST00000451550 258 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 RNA5SP57-201ENST00000459463 123 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 SNORA40.9-201ENST00000515895 93 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 RNU2-34P-201ENST00000516534 121 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 AK6P2-201ENST00000549020 471 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 AL442163.3-201ENST00000554110 156 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 MIR4303-201ENST00000581299 66 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 AC008749.1-201ENST00000597650 306 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 AL627230.6-201ENST00000611129 280 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 MIR4272-201ENST00000635924 64 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP38Q8NB14 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP38Q8NB14 AC009487.4-201ENST00000624969 3585 ntBASIC2.19□□□□□ -2.06
USP38Q8NB14 AC060773.1-201ENST00000421698 310 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 AC096920.1-201ENST00000423991 241 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 HMGN2P34-201ENST00000437647 269 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 RNU6-625P-201ENST00000459412 107 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 RNU6-408P-201ENST00000515910 100 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 RNU6-856P-201ENST00000516959 98 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 CYCSP23-201ENST00000519781 313 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 AC018448.1-201ENST00000552843 316 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.18□□□□□ -2.06
USP38Q8NB14 MIR6504-201ENST00000613520 61 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 RMST_2.1-201ENST00000617263 136 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 AC138305.3-201ENST00000624988 240 ntBASIC2.18□□□□□ -2.06
USP38Q8NB14 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.18□□□□□ -2.06
USP38Q8NB14 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.18□□□□□ -2.06
USP38Q8NB14 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
USP38Q8NB14 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
USP38Q8NB14 Y_RNA.31-201ENST00000362574 102 ntBASIC2.17□□□□□ -2.06
USP38Q8NB14 SNORD42.2-201ENST00000365570 69 ntBASIC2.17□□□□□ -2.06
USP38Q8NB14 MIR613-201ENST00000385248 95 ntBASIC2.17□□□□□ -2.06
USP38Q8NB14 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
USP38Q8NB14 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms