Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.32□□□□□ -2.04
USP43Q70EL4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.32□□□□□ -2.04
USP43Q70EL4 HMGN2P10-201ENST00000448085 265 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 AC108938.1-201ENST00000451204 136 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 AL137159.1-201ENST00000452808 512 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.32□□□□□ -2.04
USP43Q70EL4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.32□□□□□ -2.04
USP43Q70EL4 SNORD109B-201ENST00000458961 67 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 SNORD109A-201ENST00000459128 67 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 RPS29P20-201ENST00000489592 171 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 AC005840.1-201ENST00000498412 377 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.32□□□□□ -2.04
USP43Q70EL4 PDCD5P2-201ENST00000507570 312 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 RNU6-191P-201ENST00000516295 94 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 AL357075.2-201ENST00000614906 189 ntBASIC2.32□□□□□ -2.04
USP43Q70EL4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
USP43Q70EL4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USP43Q70EL4 AC068700.1-201ENST00000565862 3754 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP43Q70EL4 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 SNORD56.1-201ENST00000362913 68 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 SNORD115-8-201ENST00000363856 82 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RNU6-151P-201ENST00000364158 107 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 Y_RNA.230-201ENST00000364348 109 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 SNORD115-38-201ENST00000365037 82 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 SNORA18.3-201ENST00000384122 132 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RNU6-843P-201ENST00000384454 104 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 SNORA46.1-201ENST00000391069 153 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RNU2-2P-201ENST00000410396 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RN7SKP61-201ENST00000410642 295 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RNU6-1199P-201ENST00000411249 104 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 BPY2DP-201ENST00000422208 265 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.31□□□□□ -2.04
USP43Q70EL4 TRBV12-1-201ENST00000479785 344 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 YWHAEP4-201ENST00000505390 198 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RNU6-1234P-201ENST00000516877 103 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 CKS1BP7-201ENST00000522230 235 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 DEFB131C-201ENST00000528817 165 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 AC079600.2-201ENST00000550076 130 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.31□□□□□ -2.04
USP43Q70EL4 MIR548X2-201ENST00000579776 100 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 AC022441.3-201ENST00000605737 136 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RNU2-4P-201ENST00000606190 192 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.15-201ENST00000611544 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.16-201ENST00000613119 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.12-201ENST00000613778 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.9-201ENST00000615427 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.11-201ENST00000616345 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.2-201ENST00000616535 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.3-201ENST00000617785 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.19-201ENST00000618602 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 RNU2-1-201ENST00000618664 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.6-201ENST00000619225 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.5-201ENST00000619465 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 U2.10-201ENST00000620268 191 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.31□□□□□ -2.04
USP43Q70EL4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.31□□□□□ -2.04
USP43Q70EL4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.31□□□□□ -2.04
USP43Q70EL4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP43Q70EL4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
USP43Q70EL4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
USP43Q70EL4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
USP43Q70EL4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
USP43Q70EL4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.3□□□□□ -2.04
USP43Q70EL4 Y_RNA.7-201ENST00000362352 102 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU6-859P-201ENST00000362728 107 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 Y_RNA.121-201ENST00000363309 113 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU6-1141P-201ENST00000364520 107 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU6-142P-201ENST00000384019 107 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU6-514P-201ENST00000384208 107 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 SNORA40-201ENST00000388090 126 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 MIR767-201ENST00000390228 109 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU6-159P-201ENST00000391080 106 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU6-1245P-201ENST00000411130 106 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU6-1001P-201ENST00000411265 100 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 AC007064.1-201ENST00000412238 351 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.3□□□□□ -2.04
USP43Q70EL4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.3□□□□□ -2.04
USP43Q70EL4 AC024067.1-201ENST00000426199 223 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 AL358075.3-201ENST00000426289 226 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 Y_RNA.637-201ENST00000459424 114 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 RNU7-23P-201ENST00000459465 62 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.3□□□□□ -2.04
USP43Q70EL4 AC021739.1-201ENST00000559631 174 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 UBL5P4-201ENST00000562584 236 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 MIR3684-201ENST00000579779 74 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 HMGN2P15-201ENST00000585707 270 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.3□□□□□ -2.04
USP43Q70EL4 AC008873.1-201ENST00000625051 138 ntBASIC2.3□□□□□ -2.04
USP43Q70EL4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
USP43Q70EL4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP43Q70EL4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USP43Q70EL4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
USP43Q70EL4 RNU4-80P-201ENST00000363200 141 ntBASIC2.29□□□□□ -2.04
USP43Q70EL4 RNU6-1285P-201ENST00000363480 105 ntBASIC2.29□□□□□ -2.04
USP43Q70EL4 Y_RNA.319-201ENST00000365138 92 ntBASIC2.29□□□□□ -2.04
USP43Q70EL4 Y_RNA.331-201ENST00000365267 102 ntBASIC2.29□□□□□ -2.04
USP43Q70EL4 RNU6-622P-201ENST00000384272 103 ntBASIC2.29□□□□□ -2.04
USP43Q70EL4 RNU6-429P-201ENST00000384582 108 ntBASIC2.29□□□□□ -2.04
USP43Q70EL4 Y_RNA.563-201ENST00000384707 108 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms