Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.498-201ENST00000384460 102 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 MIR586-201ENST00000385035 97 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 RNA5SP212-201ENST00000391223 107 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 RNU2-40P-201ENST00000410833 196 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 AC244636.1-201ENST00000421152 228 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 RNU6-408P-201ENST00000515910 100 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 RNU6-948P-201ENST00000516374 107 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 RNU4-77P-201ENST00000516692 156 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.701-201ENST00000516812 110 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 AK6P2-201ENST00000549020 471 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 AC138305.3-201ENST00000624988 240 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 MIR4272-201ENST00000635924 64 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 MTND4P1-201ENST00000457501 1466 ntBASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
PDLIM3Q53GG5 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 MTND5P6-201ENST00000422338 1798 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 RNU1-58P-201ENST00000362413 163 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 RNA5SP465-201ENST00000391195 109 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 MTCO1P44-201ENST00000441935 243 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 AL137792.2-201ENST00000443484 235 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 AC074290.1-201ENST00000448883 135 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 PCNPP5-201ENST00000452246 481 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.631-201ENST00000459607 101 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 SNORA40.9-201ENST00000515895 93 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 RNA5SP200-201ENST00000516360 103 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 RNU1-40P-201ENST00000516816 164 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 RNU1-97P-201ENST00000516872 164 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 MIR5188-201ENST00000583467 113 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 VN1R91P-201ENST00000594377 169 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 SNORD58B-201ENST00000607313 66 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 AL606534.2-204ENST00000635008 178 ntBASIC1.8□□□□□ -2.12
PDLIM3Q53GG5 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 RNU6-1145P-201ENST00000384246 107 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 MCFD2P1-201ENST00000417812 300 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 CYCSP49-201ENST00000420810 319 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 PMCHL1-202ENST00000423102 261 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 AC018865.2-201ENST00000423631 129 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.639-201ENST00000458981 102 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 RNU6-625P-201ENST00000459412 107 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 RNA5SP57-201ENST00000459463 123 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 AC010469.2-201ENST00000496412 480 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 RN7SKP49-201ENST00000516675 260 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 AC018448.1-201ENST00000552843 316 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 AL442163.3-201ENST00000554110 156 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 MIR3171-201ENST00000584270 74 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 MIR5002-201ENST00000584713 97 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 AC002984.1-201ENST00000591692 448 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 snoZ196.1-201ENST00000625269 89 ntBASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.11-201ENST00000362375 109 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 RNU6-694P-201ENST00000364071 147 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 RNU6-450P-201ENST00000364654 107 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 SNORA8-201ENST00000384574 139 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 MIR548P-201ENST00000408336 84 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 MIR1283-2-201ENST00000408621 87 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 RNA5SP489-201ENST00000410986 109 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 HMGN2P34-201ENST00000437647 269 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 MTND4P19-201ENST00000446659 478 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 MIR3169-201ENST00000578032 83 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 MIR4659A-201ENST00000580269 81 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 RPS29P30-201ENST00000600975 111 ntBASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
PDLIM3Q53GG5 Y_RNA.128-201ENST00000363391 112 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.148-201ENST00000363557 117 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 RNU6-961P-201ENST00000363893 105 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 SNORA22B-201ENST00000383876 138 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.395-201ENST00000383945 109 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 MIR1253-201ENST00000408273 105 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 ELOCP21-201ENST00000412558 336 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AL354751.2-201ENST00000415471 210 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AC060773.1-201ENST00000421698 310 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 MIR2355-201ENST00000517199 87 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 SUMO2P18-201ENST00000518873 252 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 MIR4448-201ENST00000584360 86 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AL356055.1-201ENST00000602528 446 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AL360085.1-201ENST00000604713 532 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 MIR6845-201ENST00000613182 61 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 U1.36-201ENST00000620684 176 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 MIR6132-201ENST00000622083 109 ntBASIC1.77□□□□□ -2.13
PDLIM3Q53GG5 AC091925.1-201ENST00000623204 462 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms