Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC112487.2-201ENST00000637950 304 ntBASIC1.75□□□□□ -2.13
LHX1P48742 AC006026.1-201ENST00000444025 1803 ntBASIC1.75□□□□□ -2.13
LHX1P48742 RNA5SP361-201ENST00000362686 118 ntBASIC1.74□□□□□ -2.13
LHX1P48742 RNU6-1240P-201ENST00000365155 104 ntBASIC1.74□□□□□ -2.13
LHX1P48742 SNORA69.1-201ENST00000390904 137 ntBASIC1.74□□□□□ -2.13
LHX1P48742 AL117342.1-201ENST00000404861 406 ntBASIC1.74□□□□□ -2.13
LHX1P48742 AC016909.1-201ENST00000415916 166 ntBASIC1.74□□□□□ -2.13
LHX1P48742 CST2P1-201ENST00000425770 87 ntBASIC1.74□□□□□ -2.13
LHX1P48742 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.74□□□□□ -2.13
LHX1P48742 UQCRBP2-201ENST00000447827 297 ntBASIC1.74□□□□□ -2.13
LHX1P48742 AC105758.1-201ENST00000506038 399 ntBASIC1.74□□□□□ -2.13
LHX1P48742 RNU7-4P-201ENST00000516961 62 ntBASIC1.74□□□□□ -2.13
LHX1P48742 MIR2355-201ENST00000517199 87 ntBASIC1.74□□□□□ -2.13
LHX1P48742 AC091144.1-201ENST00000519573 138 ntBASIC1.74□□□□□ -2.13
LHX1P48742 AC093027.1-201ENST00000546698 429 ntBASIC1.74□□□□□ -2.13
LHX1P48742 AC022254.1-201ENST00000567857 235 ntBASIC1.74□□□□□ -2.13
LHX1P48742 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
LHX1P48742 AC073544.1-201ENST00000600110 1595 ntBASIC1.73□□□□□ -2.13
LHX1P48742 RNU6-1266P-201ENST00000362794 105 ntBASIC1.73□□□□□ -2.13
LHX1P48742 RNU6-112P-201ENST00000363599 104 ntBASIC1.73□□□□□ -2.13
LHX1P48742 RNU6-1145P-201ENST00000384246 107 ntBASIC1.73□□□□□ -2.13
LHX1P48742 MT-TD-201ENST00000387419 68 ntBASIC1.73□□□□□ -2.13
LHX1P48742 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.73□□□□□ -2.13
LHX1P48742 AC236972.2-201ENST00000434979 310 ntBASIC1.73□□□□□ -2.13
LHX1P48742 SNORD19B-201ENST00000459623 84 ntBASIC1.73□□□□□ -2.13
LHX1P48742 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.73□□□□□ -2.13
LHX1P48742 AC010409.1-201ENST00000487382 476 ntBASIC1.73□□□□□ -2.13
LHX1P48742 RN7SKP49-201ENST00000516675 260 ntBASIC1.73□□□□□ -2.13
LHX1P48742 AC144568.1-201ENST00000520139 137 ntBASIC1.73□□□□□ -2.13
LHX1P48742 AC010900.2-201ENST00000604508 210 ntBASIC1.73□□□□□ -2.13
LHX1P48742 AC087588.2-201ENST00000617667 426 ntBASIC1.73□□□□□ -2.13
LHX1P48742 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
LHX1P48742 MTND5P10-201ENST00000603719 1809 ntBASIC1.73□□□□□ -2.13
LHX1P48742 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.72□□□□□ -2.13
LHX1P48742 RNU6-490P-201ENST00000362985 107 ntBASIC1.72□□□□□ -2.13
LHX1P48742 RNU6-1019P-201ENST00000364424 107 ntBASIC1.72□□□□□ -2.13
LHX1P48742 RNU6-1040P-201ENST00000383974 107 ntBASIC1.72□□□□□ -2.13
LHX1P48742 RNU6-417P-201ENST00000384712 107 ntBASIC1.72□□□□□ -2.13
LHX1P48742 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.72□□□□□ -2.13
LHX1P48742 TOMM22P2-201ENST00000430735 237 ntBASIC1.72□□□□□ -2.13
LHX1P48742 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.72□□□□□ -2.13
LHX1P48742 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.72□□□□□ -2.13
LHX1P48742 MTND3P22-201ENST00000510932 243 ntBASIC1.72□□□□□ -2.13
LHX1P48742 SNORA31.17-201ENST00000516953 127 ntBASIC1.72□□□□□ -2.13
LHX1P48742 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.72□□□□□ -2.13
LHX1P48742 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.72□□□□□ -2.13
LHX1P48742 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.72□□□□□ -2.13
LHX1P48742 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LHX1P48742 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
LHX1P48742 Y_RNA.314-201ENST00000365114 102 ntBASIC1.71□□□□□ -2.14
LHX1P48742 RNU6-318P-201ENST00000384283 103 ntBASIC1.71□□□□□ -2.14
LHX1P48742 MIR515-2-201ENST00000384883 83 ntBASIC1.71□□□□□ -2.14
LHX1P48742 MIR515-1-201ENST00000384884 83 ntBASIC1.71□□□□□ -2.14
LHX1P48742 MIR559-201ENST00000385188 96 ntBASIC1.71□□□□□ -2.14
LHX1P48742 Y_RNA.592-201ENST00000410274 109 ntBASIC1.71□□□□□ -2.14
LHX1P48742 RN7SKP101-201ENST00000411376 320 ntBASIC1.71□□□□□ -2.14
LHX1P48742 MRPS18CP6-201ENST00000423587 223 ntBASIC1.71□□□□□ -2.14
LHX1P48742 MTND4P28-201ENST00000426217 387 ntBASIC1.71□□□□□ -2.14
LHX1P48742 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.71□□□□□ -2.14
LHX1P48742 AC099799.1-201ENST00000439809 192 ntBASIC1.71□□□□□ -2.14
LHX1P48742 PCNPP5-201ENST00000452246 481 ntBASIC1.71□□□□□ -2.14
LHX1P48742 AC074133.1-201ENST00000515696 183 ntBASIC1.71□□□□□ -2.14
LHX1P48742 AC084364.2-201ENST00000546924 395 ntBASIC1.71□□□□□ -2.14
LHX1P48742 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.71□□□□□ -2.14
LHX1P48742 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.71□□□□□ -2.14
LHX1P48742 AL357075.2-201ENST00000614906 189 ntBASIC1.71□□□□□ -2.14
LHX1P48742 AL008636.1-201ENST00000625038 1018 ntBASIC1.71□□□□□ -2.14
LHX1P48742 AC010615.1-201ENST00000594254 1764 ntBASIC1.71□□□□□ -2.14
LHX1P48742 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
LHX1P48742 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.7□□□□□ -2.14
LHX1P48742 RNU6-1301P-201ENST00000362724 104 ntBASIC1.7□□□□□ -2.14
LHX1P48742 Y_RNA.58-201ENST00000362807 102 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNU4-73P-201ENST00000363164 141 ntBASIC1.7□□□□□ -2.14
LHX1P48742 Y_RNA.154-201ENST00000363624 102 ntBASIC1.7□□□□□ -2.14
LHX1P48742 Y_RNA.187-201ENST00000363918 113 ntBASIC1.7□□□□□ -2.14
LHX1P48742 Y_RNA.287-201ENST00000364853 94 ntBASIC1.7□□□□□ -2.14
LHX1P48742 SNORA72.2-201ENST00000365028 127 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNY3P1-201ENST00000365085 102 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNY3-201ENST00000365484 102 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNU6-296P-201ENST00000384608 107 ntBASIC1.7□□□□□ -2.14
LHX1P48742 MIR520A-201ENST00000384862 85 ntBASIC1.7□□□□□ -2.14
LHX1P48742 Y_RNA.605-201ENST00000410577 105 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNU2-7P-201ENST00000410794 178 ntBASIC1.7□□□□□ -2.14
LHX1P48742 EBAG9P1-201ENST00000418955 543 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RPL31P63-201ENST00000422565 375 ntBASIC1.7□□□□□ -2.14
LHX1P48742 AC245047.4-201ENST00000433189 144 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNU7-152P-201ENST00000458982 64 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNU7-169P-201ENST00000459456 61 ntBASIC1.7□□□□□ -2.14
LHX1P48742 RNU6-699P-201ENST00000517081 110 ntBASIC1.7□□□□□ -2.14
LHX1P48742 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.7□□□□□ -2.14
LHX1P48742 SNORD53B-201ENST00000577887 78 ntBASIC1.7□□□□□ -2.14
LHX1P48742 Y_RNA.146-201ENST00000363549 102 ntBASIC1.69□□□□□ -2.14
LHX1P48742 SNORA33-201ENST00000363664 130 ntBASIC1.69□□□□□ -2.14
LHX1P48742 RNU6-457P-201ENST00000363999 107 ntBASIC1.69□□□□□ -2.14
LHX1P48742 RNU6-1264P-201ENST00000383891 107 ntBASIC1.69□□□□□ -2.14
LHX1P48742 Y_RNA.498-201ENST00000384460 102 ntBASIC1.69□□□□□ -2.14
LHX1P48742 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
LHX1P48742 SNORD12B-201ENST00000410433 91 ntBASIC1.69□□□□□ -2.14
LHX1P48742 ELOCP21-201ENST00000412558 336 ntBASIC1.69□□□□□ -2.14
LHX1P48742 AC069257.2-201ENST00000441819 155 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms