Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 SNORD78.2-201ENST00000391076 69 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 AL627390.1-201ENST00000396055 340 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 SNORD12B-201ENST00000410433 91 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 RNA5SP504-201ENST00000410676 117 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 UQCRBP2-201ENST00000447827 297 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.13□□□□□ -2.07
SHMT1P34896 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 AP000553.5-201ENST00000641933 54 ntBASIC2.13□□□□□ -2.07
SHMT1P34896 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
SHMT1P34896 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.12□□□□□ -2.07
SHMT1P34896 SNORD87-201ENST00000364849 89 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 RNA5SP37-201ENST00000365420 130 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 SNORD14.1-201ENST00000365609 90 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 Y_RNA.424-201ENST00000384063 103 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 RNU6-975P-201ENST00000384296 105 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 Y_RNA.485-201ENST00000384395 102 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 RNU6-160P-201ENST00000384591 107 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SHMT1P34896 AL357134.1-201ENST00000445848 426 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 AC112492.4-201ENST00000456549 352 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.12□□□□□ -2.07
SHMT1P34896 AC067942.3-201ENST00000512025 362 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 MIR4448-201ENST00000584360 86 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.12□□□□□ -2.07
SHMT1P34896 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.12□□□□□ -2.07
SHMT1P34896 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
SHMT1P34896 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SHMT1P34896 AC091812.1-201ENST00000432235 1948 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 LINC02555-201ENST00000563933 1951 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 RNU6-1235P-201ENST00000384559 107 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 MRPL42P3-201ENST00000401492 326 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.11□□□□□ -2.07
SHMT1P34896 AC139712.2-201ENST00000424302 339 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.11□□□□□ -2.07
SHMT1P34896 MTCO1P44-201ENST00000441935 243 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 FCF1P4-201ENST00000448326 183 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 RNU1-131P-201ENST00000458943 161 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 SNORD13-201ENST00000459299 104 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 RNU6-498P-201ENST00000459468 107 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 RNU7-57P-201ENST00000459540 60 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 RNU6-1012P-201ENST00000516606 109 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 AP000942.3-201ENST00000603702 160 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.11□□□□□ -2.07
SHMT1P34896 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.11□□□□□ -2.07
SHMT1P34896 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.11□□□□□ -2.07
SHMT1P34896 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 AC130454.1-201ENST00000622948 401 ntBASIC2.11□□□□□ -2.07
SHMT1P34896 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
SHMT1P34896 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SHMT1P34896 SNORD115-3-201ENST00000363100 82 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 SNORA63-201ENST00000363450 132 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 Y_RNA.216-201ENST00000364205 93 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 RNU6-1164P-201ENST00000364428 107 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 RNA5SP190-201ENST00000365222 118 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 RNU6-418P-201ENST00000384035 107 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 Y_RNA.498-201ENST00000384460 102 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 MIR548B-201ENST00000385247 97 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 HMGN2P39-201ENST00000398005 273 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 SDAD1P3-201ENST00000427380 333 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.1□□□□□ -2.07
SHMT1P34896 AC010531.2-201ENST00000465012 153 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 SNORA40.9-201ENST00000515895 93 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 RNA5SP458-201ENST00000516188 119 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 RNU6-107P-201ENST00000516643 102 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 Y_RNA.721-201ENST00000517207 102 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 AC018448.1-201ENST00000552843 316 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 MIR4255-201ENST00000579351 72 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 AC016925.2-201ENST00000605108 242 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 AL357075.2-201ENST00000614906 189 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SHMT1P34896 AL359851.1-201ENST00000569460 4997 ntBASIC2.1□□□□□ -2.07
SHMT1P34896 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.09□□□□□ -2.07
SHMT1P34896 MIR340-201ENST00000362125 95 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 Y_RNA.158-201ENST00000363651 101 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 RNU4-50P-201ENST00000364361 141 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 SNORA16.1-201ENST00000364597 132 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 RNA5SP138-201ENST00000365098 114 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 SNORA33.2-201ENST00000365413 134 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 RNU6-708P-201ENST00000384217 107 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 MRPL35P1-201ENST00000404272 572 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 ELOCP21-201ENST00000412558 336 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
SHMT1P34896 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.09□□□□□ -2.07
SHMT1P34896 SNORA25.15-201ENST00000516487 89 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 AC040926.1-201ENST00000530195 238 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 AK6P2-201ENST00000549020 471 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.09□□□□□ -2.07
SHMT1P34896 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.09□□□□□ -2.07
SHMT1P34896 snoZ196.1-201ENST00000625269 89 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 U6.92-201ENST00000636464 89 ntBASIC2.09□□□□□ -2.07
SHMT1P34896 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
SHMT1P34896 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
SHMT1P34896 RNU1-58P-201ENST00000362413 163 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 RNU6-1264P-201ENST00000383891 107 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 Y_RNA.422-201ENST00000384054 114 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 RNU6-926P-201ENST00000384075 107 ntBASIC2.08□□□□□ -2.08
SHMT1P34896 MIR518A2-201ENST00000384966 87 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms